CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613624_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613624_at CB970090 - - 1e+0 At5g15670 F-box family protein S.X. H.G.
0.01 2.1 1615233_at CF514173 - - 3e-1 At5g58005 unknown protein S.X. H.G.
0.00 0.5 1611556_at CB913062 - - 7e+0 At1g76460 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.00 0.5 1622733_at BQ793487 - - 2e+0 At5g58060 YKT61 S.X. H.G.
0.00 0.5 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein S.X. H.G.
0.00 0.5 AFFX-Vvi-actin-3_c1_s_at - actin 1 - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 99.3 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
7.6 99.3 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.3 99.2 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.3 99.2 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.9 99.1 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
6.7 99.0 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.3 98.8 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.9 98.6 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1618911_at CF215093 hypothetical protein LOC100253934 - 5e-6 At3g51030 ATTRX1 C.G. S.X.
0.03 1e+0 32 1616206_at CF209353 - - 1e+0 At2g14935 LCR40 (Low-molecular-weight cysteine-rich 40) C.G. S.X.
0.03 1e+0 32 1607286_at CF207311 hypothetical protein LOC100267511 - 3e-69 At3g12150 unknown protein C.G. S.X.
0.02 5e+0 30 1621269_at CB003298 - - 1e+0 At1g43666 lipid transfer protein-related C.G. S.X.
0.02 5e+0 30 1619442_at CB977195 hypothetical protein LOC100249606 - 1e-1 At1g79270 ECT8 (evolutionarily conserved C-terminal region 8) C.G. S.X.
0.02 5e+0 30 1617982_at CB980316 hypothetical protein LOC100247800 - 4e-21 At3g05520 F-actin capping protein alpha subunit family protein C.G. S.X.
0.06 5e+0 30 1617009_at CF202370.1 hypothetical protein LOC100245566 - 9e-1 At4g30410 transcription factor C.G. S.X.
0.02 5e+0 30 1616209_a_at CF215621 similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding - 3e-5 At5g51980 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative C.G. S.X.
0.03 5e+0 30 1615864_at CF519020 - - 3e+0 At4g03060 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g15670 831421 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 6e+0 32 Glycine max HgAffx.20945.1.S1_at BI748808 - - 2e-1 At4g23885 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig13748_s_at Contig13748 - - 1e+0 At5g19170 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os01g0600500 BX927920 - HAD-superfamily subfamily IB hydrolase,hypothetical 1 protein 2e-3 At1g73010 phosphatase C.G. S.X.
0.05 6e-3 42 Populus trichocarpa PtpAffx.2589.1.A1_s_at BP934844 - - 1e-3 At4g34110 PAB2 (POLY(A) BINDING 2) C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.105348.1.S1_at CA735798 - - 7e-1 At3g04181 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.2842.1.A1_at AW017874 hypothetical protein LOC100275321 - 8e-1 At4g10650 GTP binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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