Gene omics information

Query gene ID	1613608_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	95.1	1613608_at	CB916843	-	-	2e-8	At2g42000	plant EC metallothionein-like family 15 protein	S.X.	H.G.	Please select
0.36	50.7	1607567_at	BQ795116	hypothetical protein LOC100242568 /// hypothetical protein LOC100257658	-	4e-1	At2g22900	galactosyl transferase GMA12/MNN10 family protein	S.X.	H.G.	Please select
0.33	45.7	1622090_at	CD801504	hypothetical protein LOC100260385	-	1e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please select
0.31	41.3	1615556_at	CB969107	hypothetical protein LOC100256985	-	5e-17	At2g28680	cupin family protein	S.X.	H.G.	Please select
0.25	30.5	1606826_at	CF210409	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	S.X.	H.G.	Please select
0.14	14.4	1609101_at	CB921620	hypothetical protein LOC100252214	-	9e-31	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	S.X.	H.G.	Please select
0.12	12.1	1610012_s_at	CA814663	-	-	3e-1	At3g29030	EXPA5 (EXPANSIN A5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.9	99.6	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.9	99.6	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.4	99.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.9	99.1	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.7	99.0	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.4	98.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.1	98.7	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	773	1609832_at	CB916843	hypothetical protein LOC100267534	-	2e-8	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.13	1e-40	165	1622876_at	CF209501	hypothetical protein LOC100264658	-	2e-9	At2g26660	SPX2 (SPX DOMAIN GENE 2)	C.G.	S.X.	Please select
0.03	8e-2	36	1617911_at	BQ796680	hypothetical protein LOC100247972	-	9e-2	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	C.G.	S.X.	Please select
0.03	1e+0	32	1606723_at	CB346152	hypothetical protein LOC100260425	-	1e+0	At4g12130	aminomethyltransferase	C.G.	S.X.	Please select
0.02	5e+0	30	1622805_at	CD801410	hypothetical protein LOC100262292	-	9e-5	At1g28280	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	1622646_at	CD715208	-	-	1e+0	At2g16710	hesB-like domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	1621835_at	CF514954	-	-	2e-2	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1621504_at	CF513310	-	-	1e+0	At2g23620	MES1 (METHYL ESTERASE 1)	C.G.	S.X.	Please select
0.01	5e+0	30	1619664_at	AJ237992.1	ripening-related bZIP protein-like	-	7e-14	At4g34000	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-8	59	Arabidopsis thaliana	At2g42000	818800	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.C192000036_at	PsAffx.C192000036	-	-	4e+0	At3g23420	F-box family protein-related	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	HZ01L15u_at	HZ01L15u	-	-	4e-3	At5g39170	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	OsAffx.2377.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.61246.1.S1_at	DN497284	hypothetical protein	-	2e-36	At5g19180	ECR1 (E1 C-terminal related 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.13744.1.S1_at	AL818224	-	-	2e-2	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.144.2.A1_at	BE123186	Metallothionein2	-	1e+1	At3g58370	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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