Gene omics information

Query gene ID	1613603_at
Gene name	hypothetical protein LOC100248706
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please select
0.80	93.6	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.77	92.3	1613837_at	CF605759	hypothetical protein LOC100248706	-	4e-4	At1g47670	amino acid transporter family protein	S.X.	H.G.	Please select
0.67	87.9	1617596_at	CF201215.1	hypothetical protein LOC100264999	-	1e+0	At4g32590	ferredoxin-related	S.X.	H.G.	Please select
0.67	87.9	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.36	50.7	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	100.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
23.2	100.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.0	99.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.3	99.6	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
9.9	99.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.2	99.4	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.2	99.4	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
7.3	99.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.8	98.6	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	1620498_at	BM436882	-	-	2e-2	At1g79770	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	1616739_at	BM436882	hypothetical protein LOC100257759	-	2e-2	At1g79770	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621980_at	CB003356	-	-	3e-2	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618189_at	CB003356	-	-	3e-2	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616588_at	BQ792380	hypothetical protein LOC100268155	-	2e-20	At2g25870	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1607917_at	CB008361	hypothetical protein LOC100249280	-	1e+0	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	C.G.	S.X.	Please select
0.02	9e+0	30	1622691_s_at	AF176496.1	hypothetical protein LOC100264325	-	7e-13	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	9e+0	30	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.01	9e+0	30	1621734_at	CF512973	hypothetical protein LOC100253893	-	9e-12	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-7	57	Arabidopsis thaliana	At1g47670	841177	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.31213.1.S1_at	AW164468	-	-	2e-1	At3g13510	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	Contig11611_at	Contig11611	-	-	4e-1	At5g65060	MAF3 (MADS AFFECTING FLOWERING 3)	C.G.	S.X.	Please select
0.04	3e-4	48	Oryza sativa	Os04g0562100	AK060598.1	-	Amino acid/polyamine transporter II family protein	4e+0	At1g18080	ATARCA	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	8e-16	85	Populus trichocarpa	PtpAffx.204335.1.S1_at	pmrna8532	lysine/histidine transporter	-	8e-4	At1g47670	amino acid transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	8e+0	32	Triticum aestivum	TaAffx.98853.1.S1_at	CA657084	-	-	1e+1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9865.1.A1_at	CK826989	hypothetical protein LOC100276776	-	6e+0	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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