Gene omics information

Query gene ID	1613578_s_at
Gene name	hypothetical protein LOC100258843
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1613578_s_at	BM437454	hypothetical protein LOC100258843	-	4e-29	At2g47490	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.55	77.3	1616379_s_at	CF510946	hypothetical protein LOC100246496	-	1e-2	At4g00560	methionine adenosyltransferase regulatory beta subunit-related	S.X.	H.G.	Please select
0.50	72.7	1614253_at	CB971268	hypothetical protein LOC100252844	-	5e-15	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select
0.42	60.1	1618200_at	CF604803	-	-	5e+0	At5g54400	methyltransferase	S.X.	H.G.	Please select
0.36	50.7	1611400_at	CF510785	hypothetical protein LOC100266087	-	1e+0	At5g30520	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1616181_at	CF414551	hypothetical protein LOC100244265	-	4e-3	At3g08980	signal peptidase I family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.7	93.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
2.4	91.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1550	1619996_at	BM437454	-	-	4e-29	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622131_at	CF207024.1	-	-	9e-2	At1g76520	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1620583_s_at	CF213679	hypothetical protein LOC100247041	-	5e-1	At4g24231	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1619616_at	BQ798767	hypothetical protein LOC100254733	-	3e-9	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.02	2e+0	32	1619120_at	CB340081	hypothetical protein LOC100244913	-	3e-35	At3g55240	-	C.G.	S.X.	Please select
0.02	2e+0	32	1618743_at	CB834442	-	-	5e+0	At5g57400	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616162_s_at	CF517760	-	-	1e+0	At5g19257	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614940_at	CB834442	-	-	5e+0	At5g57400	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1607640_at	CF215061	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-29	129	Arabidopsis thaliana	At2g47490	819362	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	1e-72	274	Glycine max	Gma.6944.1.S1_at	BI970468	-	-	2e-31	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.04	3e-6	52	Hordeum vulgare	Contig19303_at	Contig19303	-	-	4e-1	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.12	9e-13	75	Oryza sativa	Os05g0357200	AK072064.1	-	Mitochondrial substrate carrier family protein	5e-27	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	1e-72	274	Populus trichocarpa	PtpAffx.47750.1.A1_at	CV277957	hypothetical protein	-	2e-24	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	7e-3	42	Triticum aestivum	Ta.15857.1.S1_at	CA498834	-	-	1e-6	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.05	5e-5	48	Zea mays	Zm.9717.1.A1_at	BM336547	hypothetical protein LOC100192773	-	9e-5	At2g47490	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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