Gene omics information

Query gene ID	1613520_at
Gene name	hypothetical protein LOC100257324
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1613520_at	CF372514	hypothetical protein LOC100257324	-	1e-6	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please select
0.73	90.8	1614558_at	CF214381	hypothetical protein LOC100252287	-	1e-3	At1g09750	chloroplast nucleoid DNA-binding protein-related	S.X.	H.G.	Please select
0.55	77.3	1619394_at	CF214464	hypothetical protein LOC100252287	-	4e-1	At1g09750	chloroplast nucleoid DNA-binding protein-related	S.X.	H.G.	Please select
0.40	57.7	1611332_at	CF371813	hypothetical protein LOC100251973	-	2e-2	At1g43665	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.30	39.4	1621456_at	CF403507	hypothetical protein LOC100252628	-	5e-2	At2g36530	LOS2	S.X.	H.G.	Please select
0.29	37.7	1610983_at	CB970564	hypothetical LOC100246453	-	3e-2	At1g18590	SOT17 (SULFOTRANSFERASE 17)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.8	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
8.0	99.3	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
7.9	99.3	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
7.5	99.2	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
7.3	99.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
4.8	97.8	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
4.6	97.6	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8
4.6	97.6	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
4.2	97.1	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
4.0	96.7	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-4	44	1620003_at	BQ796570	hypothetical protein LOC100251303	-	9e-5	At2g18800	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	C.G.	S.X.	Please select
0.05	4e-3	40	1608331_at	CF413813	-	-	1e-9	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select
0.08	2e-2	38	1618150_at	CF372200	hypothetical LOC100261619	-	9e-4	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select
0.07	7e-2	36	1622735_s_at	CB340122	hypothetical protein LOC100256457	-	1e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please select
0.04	7e-2	36	1620096_at	CF372841	hypothetical protein LOC100248328	-	5e-6	At4g03210	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	C.G.	S.X.	Please select
0.03	1e+0	32	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	C.G.	S.X.	Please select
0.03	1e+0	32	1615458_at	CB969727	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	C.G.	S.X.	Please select
0.01	1e+0	32	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1613415_at	AB074999.1	-	-	1e-11	At3g44990	XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-6	54	Arabidopsis thaliana	At1g11545	837698	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	1e-31	137	Glycine max	GmaAffx.89045.1.A1_s_at	CK605938	-	-	4e-19	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig11498_at	Contig11498	-	-	2e+0	At5g07225	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	7e+0	32	Oryza sativa	OsAffx.19268.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-14	79	Populus trichocarpa	PtpAffx.57260.1.S1_at	CV232927	-	-	7e-13	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	34	Triticum aestivum	TaAffx.128541.48.S1_at	CA669320	-	-	1e+1	At3g31068	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	ZmAffx.1168.1.S1_s_at	AW600602	early fruit mRNA	-	2e-1	At5g16380	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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