CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613491_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613491_at CD007436 - - 5e+0 At2g05900 SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) S.X. H.G.
0.29 37.7 1620815_at CF568885 - - 1e-15 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related S.X. H.G.
0.14 14.4 1610593_at CD715465 - - 1e-35 At4g16390 - S.X. H.G.
0.05 6.0 1619188_at CF204375.1 - - 2e+0 At1g48940 plastocyanin-like domain-containing protein S.X. H.G.
0.02 3.2 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein S.X. H.G.
0.00 0.5 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.8 99.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
12.5 99.8 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.0 98.0 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 3e-69 260 1609720_at CD007436 - - 5e+0 At2g05900 SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) C.G. S.X.
0.02 6e-3 40 1619871_at CD003937 - - 2e+0 At5g46940 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 6e-3 40 1617686_at CF414749 hypothetical protein LOC100246797 - 1e+0 At3g32050 unknown protein C.G. S.X.
0.02 6e-3 40 1616101_at CD003937 - - 2e+0 At5g46940 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 1e+0 32 1621065_at CF607678 - - 2e+0 At4g19400 actin binding C.G. S.X.
0.02 1e+0 32 1621007_s_at CF512257 hypothetical protein LOC100249656 - 3e-17 At3g60150 unknown protein C.G. S.X.
0.03 1e+0 32 1619494_at CA810687 hypothetical protein LOC100258992 - 1e+0 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) C.G. S.X.
0.03 1e+0 32 1618436_at CD801488 hypothetical protein LOC100251351 - 9e-1 At4g03945 enzyme inhibitor/ pectinesterase C.G. S.X.
0.02 1e+0 32 1617698_at BM436537 hypothetical protein LOC100259464 - 5e-23 At1g30910 molybdenum cofactor sulfurase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At2g05900 815142 SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.7764.1.S1_at BE190544 - - 3e+0 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare Contig12786_at Contig12786 - - 3e+0 At4g18280 glycine-rich cell wall protein-related C.G. S.X.
0.03 6e-1 36 Oryza sativa Os10g0551800 L27209.1 - Root-specific protein (RCc2 protein) 2e+0 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.146463.2.A1_s_at CV261391 hypothetical protein - 3e+0 At5g45680 FK506-binding protein 1 (FKBP13) C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.7491.1.S1_at CA657869 - - 4e+0 At2g05755 integral membrane family protein C.G. S.X.
0.02 8e+0 30 Zea mays Zm.15205.1.A1_at BM350765 - - 2e+1 At5g57860 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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