Gene omics information

Query gene ID	1613490_at
Gene name	hypothetical protein LOC100241970
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1613490_at	BQ800479	hypothetical protein LOC100241970	-	7e-22	At4g39220	ATRER1A	S.X.	H.G.	Please select
0.57	79.8	1616331_at	CF212969	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	S.X.	H.G.	Please select
0.50	72.7	1612790_at	CF608251	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	S.X.	H.G.	Please select
0.50	72.7	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	S.X.	H.G.	Please select
0.38	53.6	1617385_at	CF513590	hypothetical protein LOC100251722	-	2e-87	At2g27020	PAG1	S.X.	H.G.	Please select
0.38	53.6	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.24	28.7	1620109_s_at	BQ796928	hypothetical protein LOC100243583	-	2e+0	At3g57930	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-39	161	1622052_s_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.30	4e-39	161	1620509_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.31	2e-25	115	1622270_s_at	BQ799712	hypothetical protein LOC100249677	-	2e-4	At2g21600	ATRER1B	C.G.	S.X.	Please select
0.15	7e-7	54	1606974_at	CF405412	hypothetical protein LOC100255884	-	4e-11	At2g23310	ATRER1C1	C.G.	S.X.	Please select
0.01	4e-2	38	1619664_at	AJ237992.1	ripening-related bZIP protein-like	-	7e-14	At4g34000	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	C.G.	S.X.	Please select
0.01	2e-1	36	1611250_at	CB922487	hypothetical protein LOC100249628	-	9e-4	At4g24100	protein kinase family protein	C.G.	S.X.	Please select
0.01	6e-1	34	1618875_s_at	CF214574	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please select
0.02	6e-1	34	1617513_at	CF203551.1	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	C.G.	S.X.	Please select
0.02	6e-1	34	1615486_at	CF415476	hypothetical protein LOC100245706	-	7e-3	At5g15410	DND1 (DEFENSE NO DEATH 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	7e-22	105	Arabidopsis thaliana	At4g39220	830077	ATRER1A	Key player of retrieval of ER membrane proteins	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	1e-20	101	Glycine max	Gma.5393.2.S1_at	AW598129	-	-	5e-10	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.17	4e-34	145	Hordeum vulgare	Contig5293_at	Contig5293	-	-	2e-25	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.17	2e-29	131	Oryza sativa	Os01g0106200	AK060999.1	-	RER1A protein (AtRER1A)	2e-12	At4g39220	ATRER1A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	1e-116	420	Populus trichocarpa	Ptp.5547.1.S1_at	CK091963	hypothetical protein	-	1e-14	At4g39220	ATRER1A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	4e-11	69	Triticum aestivum	Ta.25974.1.A1_at	CD454076	-	-	2e-14	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.17	1e-46	186	Zea mays	Zm.19085.1.S1_at	CO533786	hypothetical protein LOC100194351	-	1e-5	At2g21600	ATRER1B	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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