CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613489_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1613489_at CF403663 - - 5e+0 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) S.X. H.G.
0.53 75.2 1615702_at BQ797006 hypothetical protein LOC100268087 - 4e-5 At1g17980 nucleotidyltransferase family protein S.X. H.G.
0.50 72.7 1620419_at BQ794848 hypothetical protein LOC100241492 - 5e-1 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) S.X. H.G.
0.47 67.7 1615929_at CB970992 hypothetical protein LOC100246610 - 7e-16 At5g49580 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.35 48.5 1617244_s_at CB341989 hypothetical protein LOC100262315 - 1e-23 At4g22150 PUX3 S.X. H.G.
0.31 41.3 1619248_at CA813733 hypothetical protein LOC100264750 - 3e-1 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.6 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 1616206_at CF209353 - - 1e+0 At2g14935 LCR40 (Low-molecular-weight cysteine-rich 40) C.G. S.X.
0.04 6e+0 30 1618873_at CB980637 hypothetical protein LOC100264953 - 1e+0 At3g05685 - C.G. S.X.
0.03 6e+0 30 1615479_at CA815857 hypothetical protein LOC100250632 - 2e-5 At1g26690 emp24/gp25L/p24 family protein C.G. S.X.
0.02 6e+0 30 1613758_at CA817514 hypothetical protein LOC100261013 - 4e-32 At5g63670 SPT42 (SPT4 HOMOLOG 2) C.G. S.X.
0.02 6e+0 30 1613511_at BQ796246 hypothetical protein LOC100251492 - 4e-1 At2g45630 oxidoreductase family protein C.G. S.X.
0.03 6e+0 30 1613624_at CB970090 - - 1e+0 At5g15670 F-box family protein C.G. S.X.
0.01 6e+0 30 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.02 6e+0 30 1611113_at CF215815 hypothetical protein LOC100262993 - 8e-15 At4g06599 ubiquitin family protein C.G. S.X.
0.02 6e+0 30 1610335_s_at CF511082 hypothetical protein LOC100257917 - 7e-6 At4g14300 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Arabidopsis thaliana At3g25572 6241080 CPuORF11 (Conserved peptide upstream open reading frame 11) Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF11 represents a conserved upstream opening reading frame relative to major ORF AT3G25570.1 - - - C.G. S.X.
0.03 4e-1 36 Glycine max HgAffx.23127.1.S1_at BF014722 - - 4e+0 At5g18790 ribosomal protein L33 family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEn0015O15f_s_at HVSMEn0015O15f - - 1e-3 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
0.04 1e+1 32 Oryza sativa Os01g0735566 NM_191563.1 - - 2e+0 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.85968.1.S1_at CV243582 hypothetical protein - 3e-6 At4g24560 UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16) C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.1776.2.A1_a_at BJ244531 - - 3e+0 At5g23350 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.04 2e+0 32 Zea mays Zm.12143.1.S1_at BI358874 - - 2e+0 At5g55560 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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