Gene omics information

Query gene ID	1613432_at
Gene name	hypothetical protein LOC100244217
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	S.X.	H.G.	Please select
0.91	98.8	1619563_at	CF514348	hypothetical protein LOC100255371	-	6e-3	At5g41770	crooked neck protein, putative / cell cycle protein, putative	S.X.	H.G.	Please select
0.73	90.8	1609694_at	CB343060	similar to SNF2 domain-containing protein, putative, expressed	-	1e-23	At1g08600	ATRX	S.X.	H.G.	Please select
0.60	81.9	1611483_at	CF207449	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	S.X.	H.G.	Please select
0.32	43.1	1614110_s_at	CD801616	cullin 1	-	2e-19	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please select
0.29	37.7	1621149_at	CF514701	similar to 60S ribosomal protein L19	-	3e-79	At1g02780	emb2386 (embryo defective 2386)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-17	85	1616051_at	CF516877	hypothetical protein LOC100244217	-	2e-28	At1g67680	7S RNA binding	C.G.	S.X.	Please select
0.03	5e-3	40	1615078_at	CA818550	hypothetical protein LOC100261569	-	3e-5	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e+0	32	1622659_at	CF405929	hypothetical protein LOC100250457	-	3e-11	At3g12050	Aha1 domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	1622123_at	CB976684	-	-	2e+1	At5g48175	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1621888_at	CD710781	hypothetical protein LOC100252475	-	4e-1	At5g39570	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	1621360_at	CF206121.1	-	-	3e+0	At2g02740	WHY3 (WHIRLY 3)	C.G.	S.X.	Please select
0.03	1e+0	32	1615827_at	BQ792666	hypothetical protein LOC100252878	-	1e+0	At3g22360	AOX1B	C.G.	S.X.	Please select
0.03	1e+0	32	1615772_s_at	CB920828	hypothetical protein LOC100257232	-	7e-49	At3g62830	AUD1	C.G.	S.X.	Please select
0.04	1e+0	32	1615719_x_at	CF206121.1	-	-	3e+0	At2g02740	WHY3 (WHIRLY 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-15	83	Arabidopsis thaliana	At1g67680	843093	7S RNA binding	F:7S RNA binding;P:SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle;MOFBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-8	59	Glycine max	GmaAffx.32805.1.S1_at	BM731249	-	-	1e+0	At3g45020	50S ribosomal protein-related	C.G.	S.X.	Please select
0.05	1e-4	46	Hordeum vulgare	Contig6097_at	Contig6097	-	-	1e-8	At1g67680	7S RNA binding	C.G.	S.X.	Please select
0.06	2e-12	73	Oryza sativa	Os01g0889000	CA763093	-	TPR-like domain containing protein	1e-3	At1g67680	7S RNA binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	5e-34	145	Populus trichocarpa	Ptp.3557.1.S1_at	BU827074	-	-	8e-6	At1g67680	7S RNA binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.3896.1.A1_at	BJ254244	-	-	5e+0	At5g56452	-	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.276.1.S1_at	AI670404	-	-	3e+0	At4g02810	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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