Gene omics information

Query gene ID	1613351_at
Gene name	hypothetical protein LOC100252023
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1613351_at	CB972999	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	S.X.	H.G.	Please select
0.44	64.1	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.44	64.1	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	S.X.	H.G.	Please select
0.36	50.7	1620164_at	CF414117	hypothetical protein LOC100263547	-	6e+0	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	S.X.	H.G.	Please select
0.36	50.7	1611382_at	CF212352	hypothetical protein LOC100264955	-	2e-6	At3g53850	-	S.X.	H.G.	Please select
0.31	41.3	1622084_at	CF513595	hypothetical protein LOC100256435	-	1e+0	At5g51451	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-2	38	1612379_at	CF414853	hypothetical protein LOC100265626	-	2e-1	At2g34123	-	C.G.	S.X.	Please select
0.03	3e-1	34	1617590_s_at	CF513756	hypothetical protein LOC100241847	-	3e-26	At2g20930	-	C.G.	S.X.	Please select
0.03	3e-1	34	1613515_at	CA809086	hypothetical protein LOC100257134	-	2e-1	At2g24070	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1612301_at	CF202950.1	hypothetical protein LOC100241847	-	4e-35	At2g20930	-	C.G.	S.X.	Please select
0.02	3e-1	34	1606984_at	CB919078	hypothetical protein LOC100251815	-	8e-34	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.01	1e+0	32	1621407_at	CD801019	hypothetical protein LOC100255878	-	2e-75	At4g37550	formamidase, putative / formamide amidohydrolase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1620385_s_at	CF372803	similar to ubiquitin fusion protein	-	3e-78	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.01	1e+0	32	1619312_a_at	CD801019	hypothetical protein LOC100255878 /// hypothetical protein LOC100245575	-	2e-75	At4g37550	formamidase, putative / formamide amidohydrolase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1615941_at	BQ792716	hypothetical protein LOC100266013	-	3e-16	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	36	Arabidopsis thaliana	At5g12970	831137	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	4e-19	95	Glycine max	GmaAffx.1045.1.A1_at	BU549585	-	-	9e-20	At3g57880	C2 domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEb0012O04f_at	HVSMEb0012O04f	-	-	1e-1	At2g40580	protein kinase family protein	C.G.	S.X.	Please select
0.05	8e+0	32	Oryza sativa	OsAffx.20867.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-15	83	Populus trichocarpa	Ptp.2011.1.S1_at	CF230864	hypothetical protein	-	2e-21	At1g51570	C2 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.94052.1.A1_at	BG906678	-	-	2e-1	At4g12690	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.5615.1.A1_at	AY106412.1	-	-	5e-1	At1g78560	bile acid:sodium symporter family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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