CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613297_at

Gene name hypothetical protein LOC100249948

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1613297_at CF205415.1 hypothetical protein LOC100249948 - 2e-24 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative S.X. H.G.
0.22 25.6 1611379_at CF207737 hypothetical protein LOC100242169 - 9e-2 At5g61500 ATG3 S.X. H.G.
0.16 16.7 1614062_at CB982394 hypothetical protein LOC100245196 - 5e+0 At5g07630 lipid transporter S.X. H.G.
0.12 12.1 1622738_at CB342472 hypothetical protein LOC100243793 - 2e-28 At3g52300 ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) S.X. H.G.
0.12 12.1 1617614_at CF205963.1 - - 2e-95 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial S.X. H.G.
0.11 11.3 1612193_at CF510775 hypothetical protein LOC100257408 - 8e-53 At1g20540 transducin family protein / WD-40 repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.6 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0 88.2 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.8 86.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 38 1620148_at CF210107 hypothetical protein LOC100252338 - 3e-17 At3g58830 haloacid dehalogenase (HAD) superfamily protein C.G. S.X.
0.03 4e-1 34 1621544_at CF373059 - - 3e-1 At3g13700 RNA-binding protein, putative C.G. S.X.
0.02 2e+0 32 1622877_at CF514743 hypothetical protein LOC100244334 - 2e+0 At1g70400 - C.G. S.X.
0.02 2e+0 32 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.02 2e+0 32 1617623_at CF511284 - - 2e+0 At2g36430 unknown protein C.G. S.X.
0.02 2e+0 32 1615938_at CF208490 hypothetical protein LOC100244729 - 8e-51 At5g62700 TUB3 C.G. S.X.
0.02 2e+0 32 1614483_at CF403631 hypothetical protein LOC100260247 - 4e-1 At3g04100 AGL57 C.G. S.X.
0.02 2e+0 32 1611911_at CF212492 hypothetical protein LOC100266461 - 1e-121 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.02 7e+0 30 1622156_at CD718486 - - 1e+0 At5g44306 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 2e-24 113 Arabidopsis thaliana At4g00600 825813 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;BOMFPA - - - C.G. S.X.
0.35 8e-71 268 Glycine max Gma.6968.1.S1_at BE658893 - - 1e-63 At4g00620 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.20 6e-17 87 Hordeum vulgare Contig9117_at Contig9117 - - 8e-10 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.39 6e-20 99 Oryza sativa Os02g0120900 9630.m00197 - Tetrahydrofolate dehydrogenase/cyclohydrolasefamily protein 1e-17 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.57 1e-103 377 Populus trichocarpa PtpAffx.62808.1.S1_at CV267361 tetrahydrofolate dehydrogenase/cyclohydrolase - 2e-33 At4g00620 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.16 1e-19 97 Triticum aestivum Ta.3377.1.S1_at CA649280 - - 1e-11 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.08 7e-4 44 Zea mays Zm.3440.1.A1_at BM381706 hypothetical protein LOC100272563 - 1e-8 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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