CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613254_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1613254_at CF568816 - - 7e-8 At1g29980 - S.X. H.G.
0.46 66.5 1617789_at BQ798936 hypothetical protein LOC100246450 - 4e+0 Atmg00890 - S.X. H.G.
0.44 64.1 1614723_at CF373226 hypothetical protein LOC100259737 - 4e-1 At5g62060 F-box family protein S.X. H.G.
0.27 34.0 1617526_s_at CB972978 hypothetical protein LOC100250396 - 8e-1 At2g10920 unknown protein S.X. H.G.
0.23 27.5 1610567_at CF212759 - - 3e-5 At3g48185 unknown protein S.X. H.G.
0.20 22.4 1621559_at CF415172 hypothetical protein LOC100262734 - 3e-51 At3g28860 ABCB19 S.X. H.G.
0.17 18.2 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 98.5 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.7 98.5 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436421 V. riparia (VR, PI588259) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 0 854 1609590_s_at CB981725 hypothetical protein LOC100253669 - 3e-25 At2g34510 - C.G. S.X.
0.03 3e-1 34 1614508_at CB008806 hypothetical protein LOC100257568 - 1e-10 At1g52600 signal peptidase, putative C.G. S.X.
0.03 3e-1 34 1610730_at CB008806 - - 1e-10 At1g52600 signal peptidase, putative C.G. S.X.
0.01 3e-1 34 1607360_at CB342405 hypothetical protein LOC100246988 - 2e-47 At1g78510 SPS1 (solanesyl diphosphate synthase 1) C.G. S.X.
0.02 1e+0 32 1621903_at CF404558 UPF0497 membrane protein 15 - 2e+0 At4g09170 unknown protein C.G. S.X.
0.03 1e+0 32 1607183_at CD800939 hypothetical protein LOC100258600 - 2e+0 At5g44860 unknown protein C.G. S.X.
0.02 5e+0 30 1622260_at CD012303 - - 2e+0 At3g30460 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 5e+0 30 1621035_at CB006610 hypothetical protein LOC100249467 - 4e-18 At1g04210 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 5e+0 30 1619758_s_at CB003371 hypothetical protein LOC100254356 - 1e+0 At3g01600 anac044 (Arabidopsis NAC domain containing protein 44) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-8 57 Arabidopsis thaliana At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB - - - C.G. S.X.
0.06 1e+0 34 Glycine max GmaAffx.88655.1.A1_at CD412099 - - 6e-1 At2g14000 unknown protein C.G. S.X.
0.05 8e-3 40 Hordeum vulgare Contig5845_at Contig5845 - - 3e-3 At2g34510 - C.G. S.X.
0.04 3e-5 50 Oryza sativa Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.210902.1.S1_at pmrna21415 hypothetical protein - 1e-20 At1g09030 NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.37427.1.A1_at BJ284979 - - 3e-1 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.06 1e-7 56 Zea mays Zm.301.2.A1_x_at CO521836 hypothetical protein LOC100276367 - 4e-9 At2g34510 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage