Gene omics information

Query gene ID	1613137_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1613137_at	BQ792300	-	-	0	Atcg00180	-	S.X.	H.G.	Please select
0.91	98.8	1616709_s_at	CF205137.1	similar to RNA polymerase beta subunit	-	5e-167	Atcg00170	-	S.X.	H.G.	Please select
0.80	93.6	1614393_at	CF512750	-	-	3e+0	At1g15385	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1617074_s_at	CF204027.1	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit	-	3e-128	Atcg00750	-	S.X.	H.G.	Please select
0.47	67.7	1606657_s_at	CF200675.1	similar to RNA polymerase beta subunit	-	2e-19	Atcg00170	-	S.X.	H.G.	Please select
0.44	64.1	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	99.5	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
7.4	99.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
6.8	99.0	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
6.3	98.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.8	98.6	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
5.6	98.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.5	98.4	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
4.9	97.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
4.7	97.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
4.3	97.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1618752_at	CD799496	-	-	4e-3	At1g79975	-	C.G.	S.X.	Please select
0.02	5e-1	34	1607741_a_at	CD799496	hypothetical protein LOC100244681	-	4e-3	At1g79975	-	C.G.	S.X.	Please select
0.01	2e+0	32	1622770_at	CF209970	hypothetical protein LOC100259874	-	3e-22	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	C.G.	S.X.	Please select
0.02	2e+0	32	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619596_at	CB973318	hypothetical protein LOC100255105	-	6e-1	At1g65113	SCRL2 (SCR-Like 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1619147_at	BQ796918	hypothetical protein LOC100240909	-	2e-2	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	C.G.	S.X.	Please select
0.02	2e+0	32	1618640_at	CB912272	hypothetical protein LOC100263256	-	5e+0	Atcg01310	-	C.G.	S.X.	Please select
0.02	2e+0	32	1615052_at	CD718199	-	-	4e-1	At3g10810	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1614178_at	CD714991	-	-	8e-106	At2g39730	RCA (RUBISCO ACTIVASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	0	682	Arabidopsis thaliana	Atcg00180	-	-	RNA polymerase beta' subunit-1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.1821.1.S1_at	BE800265	-	-	5e-36	At4g27020	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	HY10F06u_at	HY10F06u	-	-	4e-2	At1g09415	NIMIN-3 (NIM1-INTERACTING 3)	C.G.	S.X.	Please select
0.40	3e-108	393	Oryza sativa	OsAffx.32205.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	4e-42	173	Populus trichocarpa	PtpAffx.214107.1.S1_at	pmrna27459	-	-	9e-41	Atcg00180	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	Ta.15781.1.S1_at	CA486873	-	-	3e-7	At3g57810	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.22	5e-104	377	Zea mays	ZmAffx.1428.1.S1_at	11990232-13	-	-	4e-108	Atcg00180	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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