Gene omics information

Query gene ID	1613129_at
Gene name	hypothetical protein LOC100266068
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	S.X.	H.G.	Please select
0.80	93.6	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	S.X.	H.G.	Please select
0.56	79.4	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	S.X.	H.G.	Please select
0.53	75.2	1611483_at	CF207449	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	S.X.	H.G.	Please select
0.50	72.7	1607726_at	CB349094	hypothetical protein LOC100262331	-	8e-25	At4g34100	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.42	60.1	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-48	192	1611587_at	CF511115	hypothetical protein LOC100266068	-	4e+0	At5g51545	LPA2 (low psii accumulation2)	C.G.	S.X.	Please select
0.02	7e-1	34	1620929_at	CD005828	-	-	5e+0	At4g10820	F-box family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1617172_at	CD005828	-	-	5e+0	At4g10820	F-box family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1615407_at	CA818445	hypothetical protein LOC100249436	-	5e-25	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select
0.01	7e-1	34	1614527_at	CB914320	hypothetical protein LOC100257095	-	2e-1	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.02	7e-1	34	1611905_at	CF205850.1	-	-	3e-1	At4g12350	MYB42 (myb domain protein 42)	C.G.	S.X.	Please select
0.02	3e+0	32	1620446_at	CF210298	hypothetical protein LOC100263361	-	7e-6	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select
0.03	3e+0	32	1619671_at	CF204107.1	-	-	2e-15	At5g41760	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1618795_at	CF518882	-	-	3e+0	At4g16447	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-13	77	Arabidopsis thaliana	At4g17330	827445	ATG2484-1	gene of unknown function expressed in seedlings, flower buds and stems	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-20	101	Glycine max	Gma.8662.1.S1_at	AW349139	-	-	1e-11	At4g17330	ATG2484-1	C.G.	S.X.	Please select
0.04	1e-6	54	Hordeum vulgare	Contig8959_at	Contig8959	-	-	2e+0	At3g33393	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	Os07g0196200	AK070765.1	-	Conserved hypothetical protein	1e-1	At4g23890	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	5e-33	143	Populus trichocarpa	PtpAffx.23738.1.S1_s_at	CX174380	hypothetical protein	-	3e-2	At5g61890	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-4	48	Triticum aestivum	Ta.5039.2.S1_at	AW448859	-	-	1e-5	At4g17330	ATG2484-1	C.G.	S.X.	Please select
0.04	1e-6	54	Zea mays	Zm.5844.1.A1_at	AI649858	-	-	9e-1	At1g56030	MIF4G domain-containing protein / U-box domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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