CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613126_at

Gene name hypothetical protein LOC100232876

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding S.X. H.G.
0.67 87.9 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) S.X. H.G.
0.61 83.2 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.55 77.3 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) S.X. H.G.
0.40 57.7 1610014_at CF405435 hypothetical protein LOC100265580 - 2e+0 At2g36620 RPL24A (ribosomal protein L24) S.X. H.G.
0.40 57.7 1614557_s_at CF405834 hypothetical protein LOC100243157 - 3e-62 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.5 91.9 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 38 1610018_at CF514810 hypothetical protein LOC100246937 - 4e-10 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) C.G. S.X.
0.02 2e-1 36 1620298_at CF513792 hypothetical protein LOC100253937 - 1e-18 At1g47270 AtTLP6 (TUBBY LIKE PROTEIN 6) C.G. S.X.
0.01 6e-1 34 1615947_at CB973630 hypothetical protein LOC100263087 - 6e-41 At5g26710 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative C.G. S.X.
0.02 6e-1 34 1614818_at CB003857 - - 7e-3 At1g06790 RNA polymerase Rpb7 N-terminal domain-containing protein C.G. S.X.
0.02 6e-1 34 1611079_at CB003857 - - 7e-3 At1g06790 RNA polymerase Rpb7 N-terminal domain-containing protein C.G. S.X.
0.01 3e+0 32 1622874_at AF441123.1 - - 4e-2 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.02 3e+0 32 1622105_x_at CF203247.1 - - 6e-1 At5g38300 unknown protein C.G. S.X.
0.02 3e+0 32 1621200_at CB836573 - - 1e+0 At4g26950 unknown protein C.G. S.X.
0.01 3e+0 32 1619059_at AF441123.1 - - 4e-2 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 5e-35 149 Arabidopsis thaliana At5g41950 834200 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMBFPAV - - - C.G. S.X.
0.41 2e-44 180 Glycine max Gma.7636.1.S1_at AW351204 - - 1e-20 At5g41950 binding C.G. S.X.
0.23 1e-12 73 Hordeum vulgare Contig6886_at Contig6886 - - 9e-7 At5g41950 binding C.G. S.X.
0.26 4e-25 117 Oryza sativa Os10g0518300 AK099732.1 - TPR-like domain containing protein 2e-5 At5g41950 binding C.G. S.X.
0.43 1e-54 214 Populus trichocarpa PtpAffx.7088.1.S1_a_at CF233424 hypothetical protein - 1e-49 At5g41950 binding C.G. S.X.
0.14 4e-8 59 Triticum aestivum Ta.8150.3.S1_a_at CA641945 - - 1e-3 At5g41950 binding C.G. S.X.
0.02 4e+0 32 Zea mays Zm.6340.1.A1_at AI691460 - - 1e+0 At4g39730 lipid-associated family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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