CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613112_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein S.X. H.G.
0.23 27.5 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein S.X. H.G.
0.11 11.3 1614949_x_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) S.X. H.G.
0.09 9.4 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein S.X. H.G.
0.03 4.2 1614869_at CF208077 hypothetical protein LOC100251847 - 1e-12 At1g50500 HIT1 (HEAT-INTOLERANT 1) S.X. H.G.
0.03 4.2 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.4 95.5 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.2 94.9 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
3.1 94.6 GSM147702 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 31
3.0 94.2 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.9 93.8 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
2.7 93.0 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.6 92.5 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 1467 1620825_s_at CB972353 hypothetical protein LOC100253453 - 1e-2 At1g33680 RNA binding / nucleic acid binding C.G. S.X.
0.02 1e-1 36 1611010_at CF214416 hypothetical protein LOC100250144 - 2e-6 At4g26410 - C.G. S.X.
0.03 2e+0 32 1617642_at CF568839 - - 1e+0 At5g65720 NFS1 C.G. S.X.
0.03 2e+0 32 1611772_at AY427110.1 - - 9e+0 At5g18060 auxin-responsive protein, putative C.G. S.X.
0.03 2e+0 32 1611050_at AY427110.1 hypothetical protein LOC100246945 - 9e+0 At5g18060 auxin-responsive protein, putative C.G. S.X.
0.02 7e+0 30 1622690_at CF514136 hypothetical protein LOC100250381 - 2e-25 At4g31600 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related C.G. S.X.
0.01 7e+0 30 1622221_at AF021809.1 sucrose transporter-like - 7e-79 At2g02860 SUT2 (SUCROSE TRANSPORTER 2) C.G. S.X.
0.01 7e+0 30 1621302_at CF609302 - - 5e-5 At1g17210 zinc ion binding C.G. S.X.
0.02 7e+0 30 1621043_at CF609414 - - 2e-15 At4g36690 ATU2AF65A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.12145.1.A1_at CK351307 - - 4e+0 At5g05150 AtATG18e C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HZ54B19r_at HZ54B19r - - 6e-20 At2g47110 UBQ6 C.G. S.X.
0.02 7e-1 36 Oryza sativa Os09g0531200 AK064107.1 - RNA recognition motif 2 domain containing protein 7e-1 At2g01080 - C.G. S.X.
0.14 4e-23 109 Populus trichocarpa PtpAffx.88652.1.A1_at CV257803 - - 2e+0 At1g79650 RAD23 C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.8337.1.S1_at CA627003 - - 6e-1 At3g03500 tatD-related deoxyribonuclease family protein C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.1507.1.S1_at 11990232-50 - - 0 Atcg00720 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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