CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613087_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.99 100.0 1613087_at CB838072 - - 9e-2 At1g43330 myb family protein-related S.X. H.G.
0.45 64.6 1621074_s_at CA809450 hypothetical protein LOC100246889 - 4e-1 At5g46030 unknown protein S.X. H.G.
0.43 61.5 1609843_at CB981161 hypothetical protein LOC100242269 - 2e+0 At5g54790 unknown protein S.X. H.G.
0.42 60.1 1619354_s_at CB973442 hypothetical protein LOC100255079 - 2e-40 At4g22220 ISU1 S.X. H.G.
0.41 58.7 1613080_at CD798687 hypothetical protein LOC100265192 - 6e-53 At3g02510 regulator of chromosome condensation (RCC1) family protein S.X. H.G.
0.39 54.9 1618851_at CF513728 - - 8e-17 At4g05000 VPS28-2 S.X. H.G.
0.37 51.7 1617692_at CB917302 hypothetical protein LOC100256614 - 3e-24 At5g65840 - S.X. H.G.
0.35 48.5 1612046_at CD800218 hypothetical protein LOC100249809 - 7e-14 At5g51280 DEAD-box protein abstrakt, putative S.X. H.G.
0.32 43.1 1613440_at CB976741 hypothetical protein LOC100252018 - 4e-10 At1g53450 unknown protein S.X. H.G.
0.32 43.1 1609908_at CB344763 hypothetical LOC100240934 - 2e-65 At1g56330 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 98.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.1 98.7 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.2 97.1 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1435 1609298_at CB838072 - - 9e-2 At1g43330 myb family protein-related C.G. S.X.
0.04 1e-7 56 1613458_at CD720192 - - 0 Atmg00900 - C.G. S.X.
0.04 1e-7 56 1609672_at CD720192 hypothetical LOC100249457 - 0 Atmg00900 - C.G. S.X.
0.03 4e-1 34 1617418_at CB835946 - - 1e+0 At5g63300 structural constituent of ribosome C.G. S.X.
0.03 4e-1 34 1613594_at CB835946 - - 1e+0 At5g63300 structural constituent of ribosome C.G. S.X.
0.03 4e-1 34 1613362_at CB339870 hypothetical protein LOC100242250 - 5e-3 At5g14710 - C.G. S.X.
0.03 2e+0 32 1620377_at CB345480 - - 3e+0 At5g26170 WRKY50 C.G. S.X.
0.02 2e+0 32 1618262_at CF207578 hypothetical protein LOC100255430 - 5e-66 At5g65110 ACX2 (ACYL-COA OXIDASE 2) C.G. S.X.
0.03 2e+0 32 1614107_at CD714676 - - 5e+0 At3g08490 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-2 38 Arabidopsis thaliana At1g43330 840934 myb family protein-related F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFV - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.5702.1.S1_at BQ576576 - - 2e+0 At5g64720 unknown protein C.G. S.X.
0.05 1e-8 59 Hordeum vulgare HVSMEk0018C05r2_at HVSMEk0018C05r2 - - 1e-142 Atmg00990 - C.G. S.X.
0.01 1e+1 32 Oryza sativa OsAffx.29122.1.S1_at - - - 0 C.G. S.X.
0.22 9e-46 184 Populus trichocarpa PtpAffx.221236.1.S1_at pmrna37970 hypothetical protein - 3e-19 Atmg00730 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.12420.3.S1_x_at CA619975 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.470.1.A1_at AI677420 SCO1 protein - 8e+0 At4g21745 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage