Gene omics information

Query gene ID	1613076_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	S.X.	H.G.	Please select
0.83	94.6	1612573_at	CF415684	similar to predicted protein	-	4e-65	At5g10400	histone H3	S.X.	H.G.	Please select
0.77	92.3	1620332_at	CF415733	similar to predicted protein	-	1e-71	At5g10390	histone H3	S.X.	H.G.	Please select
0.73	90.8	1622440_at	CF372331	similar to predicted protein	-	5e-43	At5g10400	histone H3	S.X.	H.G.	Please select
0.61	83.2	1618135_at	CB973285	hypothetical protein LOC100256203	-	1e-9	At5g27670	HTA7 (HISTONE H2A 7)	S.X.	H.G.	Please select
0.57	79.8	1614219_at	CF413920	similar to predicted protein	-	3e-47	At5g10400	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
12.0	99.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
10.7	99.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.9	98.6	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	6e-86	315	1613041_at	CF373004	hypothetical protein LOC100266695	-	2e-27	At3g46320	histone H4	C.G.	S.X.	Please select
0.42	3e-75	280	1608380_at	CF372703	hypothetical protein LOC100261486	-	1e-34	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	2e-58	224	1622709_s_at	CB339838	hypothetical protein LOC100263191	-	9e-57	At5g59690	histone H4	C.G.	S.X.	Please select
0.41	2e-51	200	1610096_at	CF212486	hypothetical protein LOC100267358	-	1e-43	At5g59970	histone H4	C.G.	S.X.	Please select
0.38	2e-48	190	1618097_at	BQ792545	hypothetical protein LOC100265646	-	2e-33	At5g59690	histone H4	C.G.	S.X.	Please select
0.39	1e-28	125	1619121_at	CF415615	hypothetical protein LOC100246791	-	2e-18	At5g59690	histone H4	C.G.	S.X.	Please select
0.08	1e-3	42	1620586_at	CA809291	-	-	1e-7	At5g59690	histone H4	C.G.	S.X.	Please select
0.03	8e-2	36	1613506_at	CF415460	hypothetical protein LOC100266783	-	2e-5	At2g45060	-	C.G.	S.X.	Please select
0.02	1e+0	32	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	2e-42	173	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.49	2e-49	196	Glycine max	Gma.1254.1.S1_at	CF921991	-	-	7e-45	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-23	109	Hordeum vulgare	Contig20_at	Contig20	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	3e-18	93	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	7e-12	71	Populus trichocarpa	PtpAffx.4633.3.S1_at	CV225507	-	-	2e-57	At1g07820	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	2e-24	113	Triticum aestivum	Ta.20813.2.S1_at	CA617209	-	-	3e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.42	2e-18	91	Zea mays	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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