CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613050_at

Gene name hypothetical protein LOC100248215

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1613050_at CB971087 hypothetical protein LOC100248215 - 5e-4 At1g20470 auxin-responsive family protein S.X. H.G.
0.80 93.6 1609772_at CF511919 hypothetical protein LOC100246247 - 3e-1 At3g56880 VQ motif-containing protein S.X. H.G.
0.71 89.5 1606978_s_at CF207835 hypothetical protein LOC100242245 - 5e-1 At1g16680 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative S.X. H.G.
0.63 84.3 1610048_at CF403624 hypothetical protein LOC100258703 - 3e-4 At5g37310 - S.X. H.G.
0.57 79.8 1607831_at BQ799075 hypothetical protein LOC100249242 - 8e-7 At3g03950 protein binding S.X. H.G.
0.43 61.5 1620268_at CF517017 - - 2e-1 At5g61630 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 96.6 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 44 1606822_at CF403527 hypothetical protein LOC100260228 - 9e+0 At5g44310 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.01 9e-3 40 1608400_at CB970574 - - 2e-11 At4g26070 MEK1 (MAP KINASE/ ERK KINASE 1) C.G. S.X.
0.02 9e-3 40 1608127_s_at AY395740.1 similar to putative mitogen-activated protein kinase kinase - 6e-13 At4g26070 MEK1 (MAP KINASE/ ERK KINASE 1) C.G. S.X.
0.02 4e-2 38 1611751_at CD003966 hypothetical protein LOC100243104 - 5e-7 At1g71480 nuclear transport factor 2 (NTF2) family protein C.G. S.X.
0.02 4e-2 38 1611009_at CB972297 hypothetical protein LOC100264948 - 4e-1 At1g54990 AXR4 (AUXIN RESISTANT 4) C.G. S.X.
0.02 4e-2 38 1607976_at CD003966 - - 5e-7 At1g71480 nuclear transport factor 2 (NTF2) family protein C.G. S.X.
0.02 4e-2 38 1606561_at CF373333 hypothetical protein LOC100249845 - 9e-8 At4g18390 TCP family transcription factor, putative C.G. S.X.
0.03 1e-1 36 1620078_at CD798888 hypothetical protein LOC100259386 - 2e-2 At5g60550 GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) C.G. S.X.
0.03 1e-1 36 1618889_at CB981513 - - 2e-1 At4g08230 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-4 46 Arabidopsis thaliana At1g20470 838635 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.46328.1.S1_at BM309375 - - 4e-6 At5g01020 protein kinase family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig3265_s_at Contig3265 - - 3e-2 At2g35910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-2 40 Oryza sativa Os04g0635800 AK099507.1 - GCN5-related N-acetyltransferase domain containingprotein 2e-19 At5g13780 GCN5-related N-acetyltransferase, putative C.G. S.X.
0.10 3e-9 63 Populus trichocarpa PtpAffx.15855.2.A1_a_at CV229250 - - 8e-1 At4g39190 unknown protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.91772.4.S1_x_at CA662402 - - 7e-2 At1g44990 unknown protein C.G. S.X.
0.03 8e-1 34 Zea mays ZmAffx.32.1.S1_at AI657422 - - 3e+0 At1g12020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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