CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1613022_s_at

Gene name hypothetical protein LOC100261985

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1613022_s_at CF569215.1 hypothetical protein LOC100261985 - 3e+0 At5g28310 oxidoreductase-related S.X. H.G.
0.77 92.3 1606646_at CA812296 hypothetical protein LOC100264115 - 2e-23 At5g09870 CESA5 (CELLULOSE SYNTHASE 5) S.X. H.G.
0.71 89.5 1615577_at CB340193 hypothetical protein LOC100256811 - 4e-92 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) S.X. H.G.
0.67 87.9 1614933_at CB003963 hypothetical protein LOC100252359 - 1e+0 At2g32450 calcium-binding EF hand family protein S.X. H.G.
0.67 87.9 1622512_at CF208965 hypothetical protein LOC100260682 - 4e-27 At4g38430 ROPGEF1 S.X. H.G.
0.59 80.6 1611391_at CF513307 hypothetical protein LOC100256320 - 1e-15 At1g48410 AGO1 (ARGONAUTE 1) S.X. H.G.
0.57 79.8 1617238_at CD800896 hypothetical protein LOC100258246 - 3e-27 At1g63430 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.53 75.2 1620765_at CF215290 hypothetical protein LOC100266143 - 2e-124 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 2e-48 188 1615807_at CF569215.1 - - 3e+0 At5g28310 oxidoreductase-related C.G. S.X.
0.18 8e-38 153 1622416_at CF518913 hypothetical protein LOC100261985 - 9e-2 At5g01870 lipid transfer protein, putative C.G. S.X.
0.13 4e-9 57 1616398_at CF972325.1 - - 3e-1 At1g26310 CAL (CAULIFLOWER) C.G. S.X.
0.02 2e-1 32 1621818_at CB971338 rd22-c protein - 2e-1 At2g29525 - C.G. S.X.
0.05 8e-1 30 1620216_at AY427184.1 - - 1e-3 At1g56520 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.05 8e-1 30 1607602_at AY427184.1 - - 1e-3 At1g56520 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.06 3e+0 28 1621491_at CB976220 - - 3e+0 At5g28310 oxidoreductase-related C.G. S.X.
0.02 3e+0 28 1617678_at CF209037 hypothetical protein LOC100267476 - 4e-8 At4g02400 - C.G. S.X.
0.04 3e+0 28 1614029_at CF518076 hypothetical LOC100260513 - 3e-4 At5g38280 PR5K C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 30 Arabidopsis thaliana At5g28310 832915 oxidoreductase-related F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM - - - C.G. S.X.
0.08 2e-2 38 Glycine max GmaAffx.75894.1.A1_at BE658191 - - 3e+0 At5g48630 cyclin family protein C.G. S.X.
0.09 5e+0 28 Hordeum vulgare HM04I24r_at HM04I24r - - 1e+0 At5g45600 GAS41 C.G. S.X.
0.05 1e+0 32 Oryza sativa Os.4403.1.A1_x_at - - - 0 C.G. S.X.
0.06 4e+0 30 Populus trichocarpa PtpAffx.225565.1.S1_at pmrna44999 hypothetical protein - 8e-1 At1g64480 CBL8 (CALCINEURIN B-LIKE PROTEIN 8) C.G. S.X.
0.08 5e-2 36 Triticum aestivum Ta.21750.1.S1_x_at CA700361 - - 1e+1 At3g42473 LCR47 (Low-molecular-weight cysteine-rich 47) C.G. S.X.
0.07 1e+0 30 Zea mays ZmAffx.886.1.A1_at AI770831 - - 8e-1 At5g22220 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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