Gene omics information

Query gene ID	1613000_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1613000_at	CF511400	-	-	4e+0	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.50	72.7	1619571_at	CB975020	-	-	4e+0	At5g04047	-	S.X.	H.G.	Please select
0.50	72.7	1616793_at	CD720210	-	-	1e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.40	57.7	1616790_at	CD798657	-	-	3e+0	At5g54590	protein kinase family protein	S.X.	H.G.	Please select
0.29	37.7	1618541_at	CF516202	-	-	8e+0	At4g16090	unknown protein	S.X.	H.G.	Please select
0.29	37.7	1617636_at	CF513931	-	-	4e+0	At5g46295	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.0	94.2	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.6	92.5	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1620592_at	CF515947	-	-	1e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1617111_at	CB971509	hypothetical protein LOC100261557	-	1e-1	At5g66720	5-azacytidine resistance protein -related	C.G.	S.X.	Please select
0.03	1e+0	32	1619322_at	CD715538	-	-	5e+0	At4g32030	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1615406_at	CB976797	hypothetical protein LOC100247342	-	2e-33	At5g05010	clathrin adaptor complexes medium subunit-related	C.G.	S.X.	Please select
0.03	1e+0	32	1613637_at	CB339468	-	-	4e+0	At2g12905	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1606653_at	CD715538	-	-	5e+0	At4g32030	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1621154_at	CD010123	-	-	1e+0	At1g11890	SEC22	C.G.	S.X.	Please select
0.02	5e+0	30	1619871_at	CD003937	-	-	2e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1618574_at	CF207002.1	-	-	6e-3	At4g32600	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g11600	826765	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	Encodes glutathione peroxidase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.49490.1.A1_at	BE824429	-	-	2e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HU05L04u_at	HU05L04u	-	-	1e+0	At4g11630	ribosomal protein L19 family protein	C.G.	S.X.	Please select
0.03	8e+0	32	Oryza sativa	OsAffx.16819.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Populus trichocarpa	PtpAffx.20806.1.S1_at	BU888613	hypothetical protein	-	4e-1	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.31556.1.S1_at	CA640930	-	-	1e+1	At4g36810	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.573.1.A1_at	AI714739	hypothetical protein LOC100280041	-	1e+1	At5g11416	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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