CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612995_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1612995_at CD012259 - - 4e-18 At3g13340 WD-40 repeat family protein S.X. H.G.
0.60 81.9 1617194_at BQ794485 hypothetical protein LOC100264514 - 5e-1 At5g37520 unknown protein S.X. H.G.
0.55 77.3 1612817_at CB002820 hypothetical protein LOC100267132 - 3e-1 At3g62330 zinc knuckle (CCHC-type) family protein S.X. H.G.
0.53 75.2 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related S.X. H.G.
0.50 72.7 1614871_s_at CF404051 hypothetical protein LOC100266189 - 7e-5 At4g32551 LUG (LEUNIG) S.X. H.G.
0.33 45.7 1622462_at CB916510 hypothetical protein LOC100265163 - 4e-23 At2g14740 ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1.8 86.0 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.7 84.7 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM147679 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 8
1.7 84.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
1.6 83.3 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.5 81.7 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
1.5 81.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 3e-53 208 1617494_at CD715453 - - 4e-13 At3g13340 WD-40 repeat family protein C.G. S.X.
0.40 3e-53 208 1613672_at CD715453 hypothetical protein LOC100249746 - 4e-13 At3g13340 WD-40 repeat family protein C.G. S.X.
0.16 2e-5 50 1618975_at CD006441 - - 4e-4 At1g55680 WD-40 repeat family protein C.G. S.X.
0.16 2e-5 50 1614481_at CD006441 hypothetical protein LOC100253167 - 4e-4 At1g55680 WD-40 repeat family protein C.G. S.X.
0.02 1e-2 40 1617826_s_at CF211169 hypothetical protein LOC100250334 - 2e-2 At1g75560 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 1e-2 40 1607932_at CF204349.1 hypothetical protein LOC100250334 - 4e-13 At1g75560 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.09 2e-1 36 1620266_at CB977258 hypothetical protein LOC100267825 - 5e-3 At3g13340 WD-40 repeat family protein C.G. S.X.
0.02 9e-1 34 1622025_at CB978608 - - 4e+0 At5g10946 unknown protein C.G. S.X.
0.01 9e-1 34 1619157_at AF359521.1 inward rectifying shaker-like K+ channel - 3e-66 At4g18290 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 4e-18 93 Arabidopsis thaliana At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA - - - C.G. S.X.
0.52 3e-118 426 Glycine max Gma.15213.1.S1_at AW756061 - - 5e-23 At3g13340 WD-40 repeat family protein C.G. S.X.
0.23 1e-10 67 Hordeum vulgare Contig3951_at Contig3951 - - 4e-6 At3g13340 WD-40 repeat family protein C.G. S.X.
0.11 2e-3 46 Oryza sativa Os02g0721600 AK111506.1 - WD-repeat protein-like 3e-10 At3g13340 WD-40 repeat family protein C.G. S.X.
0.47 7e-85 315 Populus trichocarpa PtpAffx.216291.1.S1_at pmrna30968 hypothetical protein - 3e-40 At1g55680 WD-40 repeat family protein C.G. S.X.
0.11 2e-7 57 Triticum aestivum Ta.3002.1.S1_at CD872519 - - 4e-6 At3g13340 WD-40 repeat family protein C.G. S.X.
0.07 3e-4 46 Zea mays Zm.4034.1.A1_at CF972567 - - 3e-7 At1g55680 WD-40 repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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