Gene omics information

Query gene ID	1612983_at
Gene name	hypothetical protein LOC100249094
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	S.X.	H.G.	Please select
0.33	45.7	1616264_at	CB006693	hypothetical protein LOC100253432	-	9e-2	At3g57880	C2 domain-containing protein	S.X.	H.G.	Please select
0.22	25.6	1608307_at	CF209143	hypothetical protein LOC100247674	-	2e-1	At2g33300	-	S.X.	H.G.	Please select
0.21	24.0	1618930_at	CF206622.1	hypothetical protein LOC100254102	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	S.X.	H.G.	Please select
0.19	20.9	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	S.X.	H.G.	Please select
0.12	12.1	1617131_at	CF511594	hypothetical protein LOC100242326	-	2e+0	At1g54095	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.8	93.4	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.7	93.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.6	92.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.6	92.5	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-49	194	1618080_at	CF202367.1	-	-	2e+0	At4g28556	RIC7	C.G.	S.X.	Please select
0.06	6e-22	103	1616332_at	CF210511	hypothetical protein LOC100259445	-	2e-1	At4g27660	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	1613329_at	CB969685	-	-	1e+0	At1g58160	jacalin lectin family protein	C.G.	S.X.	Please select
0.04	5e-1	34	1611418_at	CB342953	similar to NADH dehydrogenase subunit I /// similar to NADH dehydrogenase subunit I /// similar to NADH dehydrogenase subunit I	-	7e-49	Atcg01100	-	C.G.	S.X.	Please select
0.02	2e+0	32	1620681_at	CB001091	hypothetical protein LOC100244005	-	1e-9	At5g11330	monooxygenase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619423_at	CF415795	hypothetical protein LOC100255110	-	2e-9	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	C.G.	S.X.	Please select
0.02	2e+0	32	1616922_at	CB001091	-	-	1e-9	At5g11330	monooxygenase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1614221_at	CB981483	hypothetical protein LOC100247241	-	7e-75	At5g13420	transaldolase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1612195_at	CF211659	hypothetical protein LOC100255593	-	6e-9	At2g26500	cytochrome b6f complex subunit (petM), putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g15790	820822	MBD11	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	2e-37	157	Glycine max	Gma.6951.1.S1_at	AW100450	-	-	3e-12	At1g15340	MBD10	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	HVSMEl0007P18r2_at	HVSMEl0007P18r2	-	-	4e+0	At1g65020	-	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os01g0229400	AB029508.1	-	Small GTP-binding protein OsRac1	3e-8	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-14	81	Populus trichocarpa	Ptp.3410.1.S1_at	CX172380	hypothetical protein	-	3e-1	At1g25550	myb family transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.65472.1.S1_x_at	BJ244601	-	-	1e+0	At1g16500	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.1158.1.S1_at	AW438209	-	-	3e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage