CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612954_at

Gene name hypothetical protein LOC100257012

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1612954_at CF404452 hypothetical protein LOC100257012 - 4e-1 At3g55070 - S.X. H.G.
0.91 98.8 1618126_at CF213298 hypothetical protein LOC100261549 - 3e-8 At1g76660 - S.X. H.G.
0.91 98.8 1616820_at CF210812 - - 2e-1 At3g27835 - S.X. H.G.
0.60 81.9 1622665_s_at CF215188 hypothetical protein LOC100246461 - 5e+0 At5g19257 unknown protein S.X. H.G.
0.55 77.3 1616920_at CF512566 hypothetical protein LOC100251933 - 2e-12 At5g05610 AL1 (ALFIN-LIKE 1) S.X. H.G.
0.50 72.7 1619974_at CF415318 hypothetical protein LOC100250685 - 1e-3 At5g17690 TFL2 (TERMINAL FLOWER 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.0 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436375 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 5e-112 402 1622731_at CF403287 hypothetical protein LOC100257054 - 8e-12 At3g55070 - C.G. S.X.
0.02 1e-1 36 1622485_at CF205277.1 - - 4e-1 At3g21910 receptor-like protein kinase-related C.G. S.X.
0.02 2e+0 32 1622329_at CF404754 hypothetical protein LOC100259729 - 2e-46 At5g08450 - C.G. S.X.
0.01 2e+0 32 1619198_at CB983158 hypothetical protein LOC100257864 - 3e+0 At4g26790 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 2e+0 32 1617291_s_at CB914455 similar to putative 60S ribosomal protein L39 - 3e-17 At4g31985 60S ribosomal protein L39 (RPL39C) C.G. S.X.
0.01 2e+0 32 1609336_s_at CF207826 serine/threonine kinase GDBrPK-like /// hypothetical protein LOC100262674 - 2e-26 At4g40010 SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7) C.G. S.X.
0.02 2e+0 32 1608079_at CB339397 - - 6e-2 At4g10130 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 7e+0 30 1622735_s_at CB340122 hypothetical protein LOC100256457 - 1e-6 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
0.01 7e+0 30 1622107_at CB009545 hypothetical protein LOC100259620 - 2e-40 At5g55560 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 36 Arabidopsis thaliana At3g55070 824673 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO - - - C.G. S.X.
0.17 4e-42 173 Glycine max Gma.7733.2.S1_a_at AI930986 - - 6e-16 At3g55070 - C.G. S.X.
0.10 1e-8 59 Hordeum vulgare Contig10160_at Contig10160 - - 2e-10 At3g55070 - C.G. S.X.
0.06 2e-7 57 Oryza sativa Os05g0160100 AK073554.1 - Lissencephaly type-1-like homology motif domaincontaining protein 6e-17 At3g55070 - C.G. S.X.
0.20 2e-40 167 Populus trichocarpa PtpAffx.152909.1.A1_at CV280628 hypothetical protein - 7e-31 At3g55070 - C.G. S.X.
0.13 2e-9 63 Triticum aestivum Ta.12801.1.S1_at CD454370 - - 3e-3 At3g55070 - C.G. S.X.
0.08 8e-10 63 Zea mays Zm.6111.1.S1_at CO531091 hypothetical protein LOC100279208 - 8e-10 At3g55070 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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