CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612943_at

Gene name hypothetical protein LOC100250133

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 93.9 1612943_at CB346200 hypothetical protein LOC100250133 - 5e-1 At4g30480 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.67 87.9 1618305_at CF208004 hypothetical protein LOC100256855 - 3e-73 At2g26990 FUS12 (FUSCA 12) S.X. H.G.
0.45 64.6 1613658_at CD801951 hypothetical protein LOC100244785 - 4e-4 At2g02970 nucleoside phosphatase family protein / GDA1/CD39 family protein S.X. H.G.
0.40 57.7 1608723_at CB977157 hypothetical protein LOC100261604 - 3e-5 At5g22040 - S.X. H.G.
0.38 53.6 1611624_at CF510451 hypothetical protein LOC100246770 - 9e-59 At3g48170 ALDH10A9 S.X. H.G.
0.29 37.7 1616342_at BQ795972 hypothetical protein LOC100258259 - 9e-2 At5g18000 transcriptional factor B3 family protein S.X. H.G.
0.27 34.0 1621535_s_at BQ792471 hypothetical protein LOC100247214 - 6e-87 At2g18020 EMB2296 (embryo defective 2296) S.X. H.G.
0.23 27.5 1608677_at CB977949 hypothetical protein LOC100258930 - 3e-22 At3g19130 ATRBP47B (RNA-binding protein 47B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 98.4 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 34 1619946_at BQ800369 hypothetical protein LOC100256554 - 8e-3 At1g79770 unknown protein C.G. S.X.
0.02 6e-1 34 1619248_at CA813733 hypothetical protein LOC100264750 - 3e-1 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
0.03 6e-1 34 1613851_at CD800992 hypothetical protein LOC100244739 - 2e+0 At4g08039 - C.G. S.X.
0.02 6e-1 34 1611781_at CD010979 - - 3e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.02 6e-1 34 1609929_at CB346194 hypothetical protein LOC100259947 - 3e+0 At5g02440 unknown protein C.G. S.X.
0.02 6e-1 34 1609695_at CF515793 - - 1e+0 At5g28610 - C.G. S.X.
0.02 6e-1 34 1608008_at CD010979 - - 3e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.02 6e-1 34 1607924_at CB971581 hypothetical protein LOC100261557 - 3e-11 At4g16580 catalytic C.G. S.X.
0.02 2e+0 32 1622359_at CK136964.1 - - 3e-1 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-1 36 Arabidopsis thaliana At4g30480 829171 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MOPFBAV - - - C.G. S.X.
0.10 1e-11 71 Glycine max Gma.4016.1.S1_at BQ453912 - - 6e-9 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.06 7e-8 57 Hordeum vulgare Contig7664_at Contig7664 - - 6e-1 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) C.G. S.X.
0.15 7e-17 89 Oryza sativa Os10g0486900 AK063937.1 - TPR-like domain containing protein 1e-1 At2g23920 unknown protein C.G. S.X.
0.29 5e-17 89 Populus trichocarpa PtpAffx.4208.2.S1_a_at CK095161 hypothetical protein - 2e-5 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.13 9e-12 71 Triticum aestivum Ta.6777.1.A1_at CK168380 - - 7e-4 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.12 2e-11 69 Zea mays Zm.10896.1.A1_at AY106661.1 - - 2e-1 At2g23920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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