Gene omics information

Query gene ID	1612920_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.0	1612920_at	CF207623	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	S.X.	H.G.	Please select
0.60	81.9	1612793_at	CB344029	hypothetical protein LOC100261593	-	3e-5	At3g54826	-	S.X.	H.G.	Please select
0.53	75.2	1614821_at	CF216072	hypothetical protein LOC100254178	-	2e-43	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.52	73.9	1612330_at	CF372664	hypothetical protein LOC100242653	-	2e-8	At1g71750	phosphoribosyltransferase family protein	S.X.	H.G.	Please select
0.48	68.8	1609135_at	CF207623	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	S.X.	H.G.	Please select
0.47	67.7	1617466_at	CB977275	hypothetical protein LOC100265578	-	2e-6	At1g08630	THA1 (Threonine Aldolase 1)	S.X.	H.G.	Please select
0.44	64.1	1616327_at	CF211314	hypothetical protein LOC100250497	-	1e+0	At1g15330	CBS domain-containing protein	S.X.	H.G.	Please select
0.44	64.1	1608970_s_at	CF206450.1	-	-	7e-1	At4g02810	unknown protein	S.X.	H.G.	Please select
0.41	58.7	1615486_at	CF415476	hypothetical protein LOC100245706	-	7e-3	At5g15410	DND1 (DEFENSE NO DEATH 1)	S.X.	H.G.	Please select
0.41	58.7	1608361_at	CF517494	hypothetical protein LOC100264929	-	3e-18	At3g26580	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.0	99.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.7	99.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.5	99.8	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.9	99.7	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.1	99.5	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.2	99.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.0	99.3	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
6.6	98.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2	98.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1396	1609135_at	CF207623	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	C.G.	S.X.	Please select
0.03	3e-2	38	1617722_at	CA817078	-	-	1e+0	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.02	4e-1	34	1620695_at	CF204841.1	-	-	3e-20	At4g11260	SGT1B	C.G.	S.X.	Please select
0.03	4e-1	34	1620085_at	CF516195	hypothetical protein LOC100266649	-	1e+0	At1g23240	caleosin-related family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1612840_a_at	BQ794471	hypothetical protein LOC100261580	-	2e+0	At3g11470	4'-phosphopantetheinyl transferase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1611112_at	CB971308	hypothetical protein LOC100260186	-	9e-34	At2g45790	PMM (PHOSPHOMANNOMUTASE)	C.G.	S.X.	Please select
0.03	2e+0	32	1622509_at	CD801486	-	-	2e-11	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	C.G.	S.X.	Please select
0.02	2e+0	32	1621949_at	CB970083	-	-	2e+0	At4g12100	ubiquitin protein ligase binding	C.G.	S.X.	Please select
0.01	2e+0	32	1619145_s_at	CB969125	hypothetical protein LOC100250496	-	6e-36	At2g27050	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At5g56060	835704	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	F:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	Gma.8172.1.A1_at	BU548935	-	-	4e+0	At3g52940	FK (FACKEL)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig13392_at	Contig13392	-	-	5e+0	At4g32915	-	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os.4642.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-5	50	Populus trichocarpa	Ptp.6933.1.S1_at	DN495918	hypothetical protein	-	4e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	Ta.14384.1.A1_at	BQ170804	-	-	3e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.17538.1.S1_at	CK370571	hypothetical protein LOC100273692	-	1e+0	At5g50710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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