CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612907_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.2 1612907_at CB003768 - - 7e-27 At2g04530 CPZ S.X. H.G.
0.64 84.7 1615191_at BQ794962 hypothetical protein LOC100254381 - 5e-32 At4g37510 ribonuclease III family protein S.X. H.G.
0.63 84.3 1609644_at BQ799340 hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489 - 2e-14 At2g24280 serine carboxypeptidase S28 family protein S.X. H.G.
0.63 84.3 1612100_at CF215638 hypothetical protein LOC100248200 - 4e+0 At5g03840 TFL1 (TERMINAL FLOWER 1) S.X. H.G.
0.54 75.7 1621525_at CB342932 - - 2e-12 At1g67660 DNA binding / nuclease S.X. H.G.
0.51 73.2 1613696_at CA817501 hypothetical protein LOC100242891 - 1e+0 At2g25720 unknown protein S.X. H.G.
0.49 69.3 1617670_at CF211965 hypothetical protein LOC100260576 - 8e-90 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) S.X. H.G.
0.48 68.8 1613103_at CD802483 hypothetical protein LOC100249419 - 3e+0 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) S.X. H.G.
0.47 67.7 1612750_at CA817715 hypothetical protein LOC100248749 - 2e+0 At3g55390 integral membrane family protein S.X. H.G.
0.46 66.5 1614345_s_at CA814149 hypothetical protein LOC100248615 - 1e-19 At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.7 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
11.1 99.7 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
8.2 99.4 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
7.6 99.3 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
6.8 99.0 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
6.2 98.8 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
5.5 98.4 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
5.3 98.2 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
3.8 96.4 GSM147697 Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation 26
3.4 95.5 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1332 1609122_at CB003768 hypothetical protein LOC100267142 - 7e-27 At2g04530 CPZ C.G. S.X.
0.02 1e-1 36 1612283_at CD801529 hypothetical protein LOC100256599 - 4e-8 At4g18740 transcription termination factor C.G. S.X.
0.02 1e-1 36 1611615_at CF405714 hypothetical protein LOC100264011 - 4e-17 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) C.G. S.X.
0.04 4e-1 34 1615965_at CF512530 hypothetical protein LOC100256972 - 5e-23 At3g11130 clathrin heavy chain, putative C.G. S.X.
0.03 4e-1 34 1614022_at CF212029 hypothetical protein LOC100252502 - 6e-9 At4g36970 remorin family protein C.G. S.X.
0.01 2e+0 32 1618682_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.02 2e+0 32 1618067_at CF208318 - - 2e+0 At3g18690 MKS1 (MAP kinase substrate 1) C.G. S.X.
0.02 2e+0 32 1609925_at CF203692.1 - - 2e-2 At2g30080 ZIP6 C.G. S.X.
0.01 2e+0 32 1608136_s_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 7e-27 121 Arabidopsis thaliana At2g04530 814995 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.15403.1.S1_at BG653491 - - 2e+0 At1g16840 unknown protein C.G. S.X.
0.25 5e-20 97 Hordeum vulgare Contig13600_at Contig13600 - - 6e-10 At2g04530 CPZ C.G. S.X.
0.19 9e-22 105 Oryza sativa Os.13862.1.S1_at - - - 0 C.G. S.X.
0.51 7e-65 248 Populus trichocarpa PtpAffx.211893.1.S1_at pmrna23360 hypothetical protein - 2e-92 At2g04530 CPZ C.G. S.X.
0.03 9e-2 38 Triticum aestivum TaAffx.121795.1.S1_at CA653120 - - 2e+0 At1g74700 TRZ1 (TRNASE Z 1) C.G. S.X.
0.17 8e-25 113 Zea mays Zm.13095.1.A1_at CA404407 hypothetical protein LOC100217092 - 1e-7 At2g04530 CPZ C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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