CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612896_at

Gene name hypothetical protein LOC100264259

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1612896_at BQ794992 hypothetical protein LOC100264259 - 1e+0 At5g42470 - S.X. H.G.
0.60 81.9 1621845_s_at BQ794920 hypothetical protein LOC100261121 - 1e-13 At4g29350 PFN2 (PROFILIN 2) S.X. H.G.
0.50 72.7 1611204_s_at CA816223 hypothetical protein LOC100251977 - 1e-32 At2g29960 CYP5 (CYCLOPHILIN 5) S.X. H.G.
0.50 72.7 1614753_at CF415333 hypothetical protein LOC100241307 - 2e-4 At2g43090 aconitase C-terminal domain-containing protein S.X. H.G.
0.43 61.5 1610844_at BQ794886 hypothetical LOC100257700 - 5e-18 At1g28490 SYP61 (SYNTAXIN OF PLANTS 61) S.X. H.G.
0.38 53.6 1609947_at BQ798098 hypothetical protein LOC100262722 - 6e-22 At2g25310 carbohydrate binding S.X. H.G.
0.36 50.7 1611513_s_at CF414212 hypothetical protein LOC100262157 - 2e-1 At3g49950 scarecrow transcription factor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 95.5 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 34 1620470_at CB970506 hypothetical protein LOC100245759 - 8e-7 At3g17860 JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) C.G. S.X.
0.02 4e-1 34 1616956_at CF204462.1 - - 5e-13 At3g18620 zinc finger (DHHC type) family protein C.G. S.X.
0.01 4e-1 34 1614393_at CF512750 - - 3e+0 At1g15385 unknown protein C.G. S.X.
0.03 4e-1 34 1609217_at CF208353 hypothetical protein LOC100244807 - 1e+0 At4g24730 calcineurin-like phosphoesterase family protein C.G. S.X.
0.03 2e+0 32 1622323_at CB969061 hypothetical protein LOC100265497 - 3e-4 At3g25160 ER lumen protein retaining receptor family protein C.G. S.X.
0.02 2e+0 32 1621037_at CB980438 - - 5e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
0.03 2e+0 32 1618893_at CF204978.1 - - 4e-1 At2g31940 unknown protein C.G. S.X.
0.02 2e+0 32 1614032_at CD721302 - - 5e+0 At2g37060 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) C.G. S.X.
0.01 2e+0 32 1613834_at BQ797196 hypothetical protein LOC100258445 - 3e-9 At3g08030 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g42470 834254 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.05 2e-3 44 Glycine max Gma.2401.1.S1_at CD418282 - - 2e-7 At5g42470 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HO09M19S_s_at HO09M19S - - 8e-1 At5g28615 - C.G. S.X.
0.05 5e-8 59 Oryza sativa Os06g0715600 AK102724.1 - Hypothetical protein 6e-5 At5g42470 - C.G. S.X.
0.11 4e-11 69 Populus trichocarpa Ptp.915.1.A1_at CV227272 hypothetical protein - 2e-6 At5g42470 - C.G. S.X.
0.04 6e+0 32 Triticum aestivum Ta.6578.3.A1_at BJ308193 - - 1e+0 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.17495.1.A1_at AI979723 hypothetical protein LOC100279885 - 1e+0 At3g29780 RALFL27 (ralf-like 27) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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