Gene omics information

Query gene ID	1612888_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1612888_at	CF406033	-	-	4e+0	At4g16080	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1613187_at	CF214063	hypothetical protein LOC100257160	-	4e-6	At3g56720	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1611040_at	BQ794523	hypothetical protein LOC100263053	-	3e-7	At1g65020	-	S.X.	H.G.	Please select
0.40	57.7	1607940_at	BQ800262	hypothetical protein LOC100261463	-	6e-1	At1g69470	unknown protein	S.X.	H.G.	Please select
0.30	39.4	1613762_at	CF404411	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	S.X.	H.G.	Please select
0.23	27.5	1607834_at	CF216002	hypothetical protein LOC100241190	-	1e+0	At4g34780	auxin-responsive family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	95.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	1620474_at	CD714409	-	-	5e+0	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.03	1e+0	32	1608584_at	CF202654.1	-	-	5e+0	At3g63010	GID1B (GA INSENSITIVE DWARF1B)	C.G.	S.X.	Please select
0.03	1e+0	32	1607871_at	CD714409	-	-	5e+0	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.01	5e+0	30	1621302_at	CF609302	-	-	5e-5	At1g17210	zinc ion binding	C.G.	S.X.	Please select
0.03	5e+0	30	1621243_at	BQ797501	hypothetical protein LOC100257019	-	1e+0	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1618300_at	CF606877	hypothetical protein LOC100264012	-	8e-23	At2g34450	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1617521_at	CF207315	hypothetical protein LOC100263204	-	1e+0	At1g66030	CYP96A14P	C.G.	S.X.	Please select
0.03	5e+0	30	1617630_at	CF514753	hypothetical protein LOC100251032	-	3e-10	At3g52750	FTSZ2-2	C.G.	S.X.	Please select
0.03	5e+0	30	1615226_at	CF205569.1	-	-	7e-18	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At4g16080	827293	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.13929.1.A1_at	CD410470	-	-	2e-1	At1g23790	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig19851_at	Contig19851	-	-	1e-1	At1g72170	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os04g0134300	9632.m00375	-	-	2e+0	At5g25420	xanthine/uracil permease family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.204173.1.S1_at	pmrna8222	hypothetical protein	-	1e-2	At1g34290	AtRLP5 (Receptor Like Protein 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-3	42	Triticum aestivum	TaAffx.93406.1.S1_at	BJ211937	-	-	4e-3	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.970.1.A1_at	AI833868	-	-	8e-1	At3g10405	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage