CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612854_at

Gene name hypothetical protein LOC100256039

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1612854_at CB974875 hypothetical protein LOC100256039 - 1e-26 At3g48860 unknown protein S.X. H.G.
0.73 90.8 1614062_at CB982394 hypothetical protein LOC100245196 - 5e+0 At5g07630 lipid transporter S.X. H.G.
0.73 90.8 1607998_at BQ793788 hypothetical protein LOC100245820 - 4e-24 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) S.X. H.G.
0.40 57.7 1617257_at CB913191 hypothetical protein LOC100263076 - 8e-6 At3g53970 proteasome inhibitor-related S.X. H.G.
0.35 48.5 1615993_at CD801483 hypothetical protein LOC100263412 - 2e-10 At1g80410 EMB2753 (EMBRYO DEFECTIVE 2753) S.X. H.G.
0.25 30.5 1607405_at CD013596 hypothetical protein LOC100261003 - 2e-6 At1g72550 tRNA synthetase beta subunit family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.0 88.2 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
1.9 87.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.8 86.0 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.8 86.0 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
1.8 86.0 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.8 86.0 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-14 77 1617837_at CB972171 hypothetical protein LOC100260846 - 1e-12 At5g13260 unknown protein C.G. S.X.
0.02 5e-1 34 1607422_s_at CB339761 hypothetical protein LOC100244165 - 4e-26 At2g33450 50S ribosomal protein L28, chloroplast (CL28) C.G. S.X.
0.02 2e+0 32 1620738_at CD711276 hypothetical protein LOC100247142 - 1e-4 At4g08280 - C.G. S.X.
0.02 2e+0 32 1619276_at CF606876 hypothetical protein LOC100259521 - 1e-7 At3g61580 delta-8 sphingolipid desaturase (SLD1) C.G. S.X.
0.02 2e+0 32 1615457_at CB002504 - - 1e-7 At3g61580 delta-8 sphingolipid desaturase (SLD1) C.G. S.X.
0.02 2e+0 32 1613614_at CB975388 hypothetical protein LOC100252480 - 3e-16 At1g26945 KDR (KIDARI) C.G. S.X.
0.01 2e+0 32 1607409_at CF516657 hypothetical protein LOC100242669 - 1e-14 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.02 8e+0 30 1622494_at CB977042 hypothetical protein LOC100257153 - 1e-50 At1g50840 POLGAMMA2 (polymerase gamma 2) C.G. S.X.
0.02 8e+0 30 1622202_at CD721645 hypothetical LOC100243631 - 3e-1 At3g25270 nucleic acid binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-26 121 Arabidopsis thaliana At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV - - - C.G. S.X.
0.31 9e-25 115 Glycine max Gma.8638.1.A1_at CA783239 - - 5e-22 At5g13260 unknown protein C.G. S.X.
0.02 9e-1 34 Hordeum vulgare HO11K23S_s_at HO11K23S - - 4e+0 At3g17420 GPK1 C.G. S.X.
0.04 7e-14 79 Oryza sativa Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein C.G. S.X.
0.35 1e-54 214 Populus trichocarpa PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.05 2e-6 54 Triticum aestivum Ta.9619.1.S1_a_at CD908424 - - 8e-10 At3g48860 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.6064.1.S1_at CF020510 low-molecular-weight cysteine-rich protein LCR70 - 4e+0 At4g04330 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage