Gene omics information

Query gene ID	1612831_s_at
Gene name	H+-pyrophosphatase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	S.X.	H.G.	Please select
0.77	92.3	1622167_at	CB007965	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	S.X.	H.G.	Please select
0.67	87.9	1607488_at	CF373706	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	S.X.	H.G.	Please select
0.67	87.9	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	S.X.	H.G.	Please select
0.60	81.9	1611783_at	BQ792690	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	S.X.	H.G.	Please select
0.48	68.8	1606673_at	CB005473	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.1	94.6	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.8	93.4	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
2.8	93.4	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.6	92.5	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.5	91.9	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.3	90.7	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.2	89.9	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	904	1620928_at	CF201533.1	-	-	5e-9	At1g15690	AVP1	C.G.	S.X.	Please select
0.25	0	654	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	C.G.	S.X.	Please select
0.22	2e-18	91	1608114_at	CB919292	hypothetical protein LOC100256710	-	1e-44	At1g15690	AVP1	C.G.	S.X.	Please select
0.12	9e-17	85	1614834_at	BQ794614	vacuolar pyrophosphatase	-	5e-156	At1g15690	AVP1	C.G.	S.X.	Please select
0.03	1e+0	32	1615043_at	CF207020.1	-	-	2e-8	At5g43450	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	1619232_at	CA817187	hypothetical protein LOC100248696	-	6e-6	At3g06420	ATG8H (autophagy 8h)	C.G.	S.X.	Please select
0.03	5e+0	30	1617480_at	CB342000	hypothetical protein LOC100260825	-	2e-2	At4g33660	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1616945_at	CD717518	-	-	5e+0	At5g43690	sulfotransferase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1616219_at	CA811247	hypothetical protein LOC100259698	-	2e-21	At3g04920	40S ribosomal protein S24 (RPS24A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-9	61	Arabidopsis thaliana	At1g15690	838138	AVP1	Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	1e-13	77	Glycine max	Gma.5427.2.S1_a_at	BM885334	-	-	8e-92	At1g15690	AVP1	C.G.	S.X.	Please select
0.17	4e-14	77	Hordeum vulgare	Contig385_s_at	Contig385	-	-	1e-22	At1g15690	AVP1	C.G.	S.X.	Please select
0.13	2e-9	63	Oryza sativa	Os02g0184200	AU069824	-	Inorganic H+ pyrophosphatase family protein	2e-42	At1g15690	AVP1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	7e-12	71	Populus trichocarpa	Ptp.2699.1.A1_s_at	CV234550	vacuolar H+-translocating inorganic pyrophosphatase	-	1e-100	At1g15690	AVP1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-18	93	Triticum aestivum	Ta.26529.1.A1_at	CD491146	-	-	6e-46	At1g15690	AVP1	C.G.	S.X.	Please select
0.24	6e-19	93	Zea mays	Zm.6063.2.S1_at	AI668193	Vacuolar proton pump homolog1	-	2e-10	At1g15690	AVP1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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