CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612790_at

Gene name hypothetical protein LOC100243027

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1612790_at CF608251 hypothetical protein LOC100243027 - 1e-17 At1g61250 SC3 (SECRETORY CARRIER 3) S.X. H.G.
0.67 87.9 1613490_at BQ800479 hypothetical protein LOC100241970 - 7e-22 At4g39220 ATRER1A S.X. H.G.
0.50 72.7 1616331_at CF212969 hypothetical protein LOC100261989 - 6e-25 At3g08890 unknown protein S.X. H.G.
0.50 72.7 1617385_at CF513590 hypothetical protein LOC100251722 - 2e-87 At2g27020 PAG1 S.X. H.G.
0.46 66.5 1618792_at CB348194 - - 1e-37 At1g61250 SC3 (SECRETORY CARRIER 3) S.X. H.G.
0.29 37.7 1620109_s_at BQ796928 hypothetical protein LOC100243583 - 2e+0 At3g57930 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.1 89.1 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 6e-60 230 1618792_at CB348194 - - 1e-37 At1g61250 SC3 (SECRETORY CARRIER 3) C.G. S.X.
0.02 1e-2 40 1621730_at CF511530 - - 7e-19 At3g16950 LPD1 (LIPOAMIDE DEHYDROGENASE 1) C.G. S.X.
0.02 1e-2 40 1617972_at CB976079 - - 7e-19 At3g16950 LPD1 (LIPOAMIDE DEHYDROGENASE 1) C.G. S.X.
0.01 2e-1 36 1608442_at AF177590.1 ornithine aminotransferase - 8e-60 At5g46180 delta-OAT C.G. S.X.
0.01 7e-1 34 1620305_at AY043233.1 - - 2e-4 At1g65570 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.01 7e-1 34 1614905_at BQ794294 hypothetical protein LOC100266945 - 7e-96 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) C.G. S.X.
0.01 3e+0 32 1621261_at CD799075 hypothetical protein LOC100267121 - 4e-5 At1g07725 ATEXO70H6 (exocyst subunit EXO70 family protein H6) C.G. S.X.
0.01 3e+0 32 1621314_s_at CB347113 hypothetical protein LOC100253630 /// hypothetical protein LOC100261438 - 2e-10 At4g39780 AP2 domain-containing transcription factor, putative C.G. S.X.
0.02 3e+0 32 1621430_at BQ795297 hypothetical protein LOC100249442 - 2e-30 At5g18940 Mo25 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-17 91 Arabidopsis thaliana At1g61250 842418 SC3 (SECRETORY CARRIER 3) Encodes a putative secretory carrier membrane protein (SC3). - - - C.G. S.X.
0.37 5e-30 133 Glycine max Gma.4485.1.S1_at BE347874 - - 8e-13 At1g61250 SC3 (SECRETORY CARRIER 3) C.G. S.X.
0.24 2e-20 99 Hordeum vulgare Contig9943_at Contig9943 - - 2e-19 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.25 3e-13 77 Oryza sativa Os05g0503000 AK068335.1 - Secretory carrier membrane protein 2e-16 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.44 1e-135 484 Populus trichocarpa Ptp.1773.1.A1_at CV270316 hypothetical protein - 7e-78 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.22 8e-19 95 Triticum aestivum Ta.10284.1.S1_a_at BU672165 - - 9e-19 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.23 1e-12 73 Zea mays Zm.13717.1.S1_at AY106421.1 SC3 protein - 9e-16 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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