CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612781_at

Gene name hypothetical protein LOC100254037

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1612781_at CB978740 hypothetical protein LOC100254037 - 2e-2 At4g37760 SQE3 (squalene epoxidase 3) S.X. H.G.
0.57 79.8 1615654_at CF211462 hypothetical protein LOC100254037 - 7e-14 At1g58440 XF1 S.X. H.G.
0.29 37.7 1608037_at CD720882 - - 7e-18 At1g44446 CH1 (CHLORINA 1) S.X. H.G.
0.23 27.5 1609383_at CF511447 hypothetical protein LOC100256715 - 5e+0 At5g04830 unknown protein S.X. H.G.
0.17 18.2 1616202_at BQ792867 hypothetical protein LOC100262930 - 1e-3 At1g58440 XF1 S.X. H.G.
0.03 4.2 1620632_s_at CB968921 hypothetical protein LOC100249439 - 2e+0 At4g16430 basic helix-loop-helix (bHLH) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.8 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
9.5 99.6 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
9.4 99.6 GSM147696 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 25
8.6 99.5 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
8.5 99.4 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
7.6 99.3 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
6.7 99.0 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
5.7 98.5 GSM147700 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 29
5.5 98.4 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
4.9 97.9 GSM147677 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 6
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 6e-22 103 1616202_at BQ792867 hypothetical protein LOC100262930 - 1e-3 At1g58440 XF1 C.G. S.X.
0.03 1e-1 36 1622604_s_at CF608398 - - 1e+0 At4g18660 unknown protein C.G. S.X.
0.02 1e-1 36 1613132_s_at CK136916.1 hypothetical protein LOC100241814 - 6e-9 At4g21960 PRXR1 C.G. S.X.
0.02 1e-1 36 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 C.G. S.X.
0.02 4e-1 34 1610500_at CB976882 hypothetical protein LOC100255820 - 2e-78 At4g00740 dehydration-responsive protein-related C.G. S.X.
0.02 2e+0 32 1622266_x_at CF205286.1 - - 5e-3 At4g14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) C.G. S.X.
0.02 2e+0 32 1621300_at CB920384 hypothetical protein LOC100244618 - 4e+0 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.02 2e+0 32 1619164_at CB344468 - - 6e-1 At5g05000 TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) C.G. S.X.
0.02 2e+0 32 1617173_s_at CF205286.1 hypothetical protein LOC100263179 - 5e-3 At4g14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 40 Arabidopsis thaliana At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA - - - C.G. S.X.
0.30 2e-22 107 Glycine max GmaAffx.20777.2.S1_at BU764579 - - 6e-11 At2g22830 SQE2 (squalene epoxidase 2) C.G. S.X.
0.16 2e-7 56 Hordeum vulgare rbags16h12_s_at rbags16h12 - - 9e-1 At2g04066 MATE efflux protein-related C.G. S.X.
0.06 8e-7 56 Oryza sativa Os03g0231800 AK065032.1 - XF1 protein (Squalene monooxygenase, putative) 1e-18 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.35 6e-87 321 Populus trichocarpa PtpAffx.205391.1.S1_at pmrna10677 hypothetical protein - 3e-68 At1g58440 XF1 C.G. S.X.
0.15 3e-17 89 Triticum aestivum Ta.7591.1.S1_at CD872021 - - 2e-8 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.13 7e-13 73 Zea mays Zm.960.1.S1_at BU093044 hypothetical protein LOC100274333 - 1e-4 At2g22830 SQE2 (squalene epoxidase 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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