CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612769_at

Gene name hypothetical protein LOC100254355

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 93.7 1612769_at CF208417 hypothetical protein LOC100254355 - 1e+0 At1g14860 atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18) S.X. H.G.
0.46 66.5 1607597_at CF512500 - - 4e+0 Atmg00320 - S.X. H.G.
0.41 58.7 1621753_at CF511403 - - 2e-1 At1g74670 gibberellin-responsive protein, putative S.X. H.G.
0.37 51.7 1620603_at CF515961 hypothetical protein LOC100256346 - 2e-43 At3g55760 unknown protein S.X. H.G.
0.36 50.7 1615000_at CF517387 - - 4e+0 At2g25820 transcription factor S.X. H.G.
0.33 45.7 1616937_at CF201099.1 hypothetical protein LOC100257035 - 1e+0 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) S.X. H.G.
0.29 37.7 1606472_at CB979487 - - 8e-21 At3g29390 RIK (RS2-Interacting KH protein) S.X. H.G.
0.28 37.7 1606814_at CF372213 hypothetical protein LOC100246736 - 1e-12 At5g60020 LAC17 (laccase 17) S.X. H.G.
0.25 30.5 1619304_s_at CB982737 hypothetical protein LOC100245623 - 1e-1 At5g39600 unknown protein S.X. H.G.
0.24 28.7 1609209_at BQ797836 hypothetical protein LOC100248592 - 1e+0 At2g40780 RNA binding / translation initiation factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 99.9 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
13.1 99.8 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
11.6 99.7 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
10.2 99.6 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
8.9 99.5 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
8.0 99.3 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
6.9 99.1 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436407 V. riparia (VR, PI588259) LD, 15h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-11 67 1618554_at CF208496 hypothetical protein LOC100254355 - 2e-1 At5g62610 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 3e-1 34 1621001_at CB978882 - - 3e+0 At3g62190 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 1e+0 32 1622268_at CF372312 - - 9e-16 At4g11110 SPA2 (SPA1-RELATED 2) C.G. S.X.
0.03 1e+0 32 1619882_at CF604338 hypothetical protein LOC100265088 - 9e-17 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.03 1e+0 32 1615537_at CF519074 hypothetical protein LOC100258656 - 3e-1 At3g54990 SMZ (SCHLAFMUTZE) C.G. S.X.
0.01 1e+0 32 1613364_at CD720561 hypothetical protein LOC100254952 - 3e-71 At3g14270 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.02 1e+0 32 1607616_at CF511066 - - 1e-27 At1g27320 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) C.G. S.X.
0.03 5e+0 30 1621255_at BQ795185 hypothetical protein LOC100255731 - 1e-3 At1g80100 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) C.G. S.X.
0.03 5e+0 30 1621140_at CB970690 hypothetical protein LOC100266085 - 2e+0 At3g03930 protein kinase-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At1g14860 838051 atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18) F:hydrolase activity;P:biological_process unknown;C:unknown;MBPOF - - - C.G. S.X.
0.04 1e+0 34 Glycine max HgAffx.24326.1.S1_at BF013523 - - 9e+0 At5g43285 - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEm0015O15f_s_at HVSMEm0015O15f - - 4e-2 At4g24026 unknown protein C.G. S.X.
0.03 1e-1 38 Oryza sativa Os06g0538800 9634.m03286 - Mitochondrial ribosomal protein S10 1e+0 At3g22300 RPS10 (RIBOSOMAL PROTEIN S10) C.G. S.X.
0.06 4e-1 36 Populus trichocarpa PtpAffx.200652.1.S1_at pmrna1268 histidine phosphotransfer protein - 1e-17 At3g16360 AHP4 (HPT PHOSPHOTRANSMITTER 4) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.13317.1.A1_at BG908643 - - 4e-1 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.7633.1.A1_at BM381057 RADIALIS - 8e-5 At1g75250 ATRL6 (ARABIDOPSIS RAD-LIKE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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