Gene omics information

Query gene ID	1612697_s_at
Gene name	hypothetical protein LOC100265958
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.3	1612697_s_at	CB340205	hypothetical protein LOC100265958	-	1e-37	At1g32210	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	S.X.	H.G.	Please select
0.52	73.9	1621965_s_at	BQ793756	hypothetical protein LOC100247098	-	8e-36	At5g23540	26S proteasome regulatory subunit, putative	S.X.	H.G.	Please select
0.51	73.2	1614905_at	BQ794294	hypothetical protein LOC100266945	-	7e-96	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	S.X.	H.G.	Please select
0.41	58.7	1621022_at	BQ794425	hypothetical protein LOC100255295	-	7e-43	At3g02080	40S ribosomal protein S19 (RPS19A)	S.X.	H.G.	Please select
0.39	54.9	1622420_at	CF372296	hypothetical protein LOC100255637	-	8e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	S.X.	H.G.	Please select
0.37	51.7	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select
0.37	51.7	1608193_s_at	CA817731	hypothetical protein LOC100263950	-	3e-1	At4g14600	-	S.X.	H.G.	Please select
0.36	50.7	1609803_s_at	CF202459.1	hypothetical protein LOC100255637	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	S.X.	H.G.	Please select
0.36	50.7	1619066_s_at	CD801269	hypothetical protein LOC100243665	-	7e-2	At2g17630	phosphoserine aminotransferase, putative	S.X.	H.G.	Please select
0.36	50.7	1613369_at	CF204992.1	hypothetical protein LOC100252297	-	1e-31	At1g01910	anion-transporting ATPase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	1614006_at	CF510542	-	-	7e+0	At5g37760	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	1608766_at	CB972419	hypothetical protein LOC100265604	-	7e-133	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.03	1e+0	32	1606634_at	CF206214.1	hypothetical protein LOC100241372	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please select
0.02	6e+0	30	1619920_at	CD721596	-	-	9e-2	At5g45790	ubiquitin thiolesterase	C.G.	S.X.	Please select
0.02	6e+0	30	1619394_at	CF214464	hypothetical protein LOC100252287	-	4e-1	At1g09750	chloroplast nucleoid DNA-binding protein-related	C.G.	S.X.	Please select
0.03	6e+0	30	1619088_at	CF403436	hypothetical protein LOC100263069	-	9e-1	At4g36950	MAPKKK21	C.G.	S.X.	Please select
0.03	6e+0	30	1618709_at	BQ799867	hypothetical protein LOC100261669	-	3e+0	At3g51190	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	6e+0	30	1618364_at	CF514983	hypothetical protein LOC100260351	-	2e-6	At1g48590	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	6e+0	30	1615500_at	CB973087	hypothetical protein LOC100254771	-	3e-12	At2g39940	COI1 (CORONATINE INSENSITIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	1e-37	157	Arabidopsis thaliana	At1g32210	840113	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	1e-38	161	Glycine max	Gma.7542.2.S1_at	CA936764	-	-	1e-53	At1g32210	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	C.G.	S.X.	Please select
0.18	1e-11	69	Hordeum vulgare	Contig5289_s_at	Contig5289	defender against death (dad) 2	-	9e-11	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	C.G.	S.X.	Please select
0.32	2e-25	117	Oryza sativa	Os04g0397000	D89726.1	-	Defender against cell death 1 (DAD-1) (Defenderagainst apoptotic death 1 protein)	4e-10	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	4e-60	232	Populus trichocarpa	Ptp.133.1.A1_at	CV248900	hypothetical protein	-	2e-46	At1g32210	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	6e-15	81	Triticum aestivum	Ta.12722.1.S1_at	BJ245825	-	-	4e-17	At1g32210	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)	C.G.	S.X.	Please select
0.19	1e-29	129	Zea mays	Zm.373.2.S1_a_at	CF040015	false DAD1	-	2e-21	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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