Gene omics information

Query gene ID	1612680_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1612680_at	BM437446	-	-	3e-27	At1g64680	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1613451_at	CD718832	-	-	8e-77	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	S.X.	H.G.	Please select
0.60	81.9	1610021_at	CB001944	-	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	S.X.	H.G.	Please select
0.50	72.7	1610991_at	CD718615	-	-	2e-6	At1g50020	unknown protein	S.X.	H.G.	Please select
0.27	34.0	1618948_at	CD715772	-	-	3e-8	At1g07010	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please select
0.04	5.2	1606996_s_at	CA817527	hypothetical protein LOC100254512	-	1e-4	At2g05620	PGR5 (proton gradient regulation 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.9	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
9.2	99.5	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
8.8	99.5	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
5.3	98.2	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
4.8	97.8	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
4.8	97.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
4.4	97.3	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
4.1	96.9	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2179	1608908_at	BM437446	hypothetical protein LOC100256431	-	3e-27	At1g64680	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	1614673_at	CF204752.1	hypothetical protein LOC100248555	-	8e-5	At3g05300	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1608685_at	BQ797451	hypothetical protein LOC100244012	-	2e+0	At3g03460	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1610372_at	CB007734	-	-	1e-7	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	C.G.	S.X.	Please select
0.02	7e-1	34	1608663_s_at	CB036095	hypothetical protein LOC100245185	-	5e-19	At3g25220	FKBP15-1	C.G.	S.X.	Please select
0.02	7e-1	34	1608451_at	CF205526.1	-	-	5e-22	At3g25220	FKBP15-1	C.G.	S.X.	Please select
0.01	7e-1	34	1608130_at	CF207500	hypothetical protein LOC100248764	-	2e-4	At3g57030	strictosidine synthase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1622340_at	CD720922	-	-	5e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	C.G.	S.X.	Please select
0.02	3e+0	32	1622359_at	CK136964.1	-	-	3e-1	At4g27310	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	3e-27	123	Arabidopsis thaliana	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	2e-66	254	Glycine max	GmaAffx.5831.1.S1_at	BU549817	-	-	2e-39	At1g64680	unknown protein	C.G.	S.X.	Please select
0.07	1e-3	44	Hordeum vulgare	Contig23045_at	Contig23045	-	-	3e-13	At1g64680	unknown protein	C.G.	S.X.	Please select
0.10	1e-15	85	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	3e-80	299	Populus trichocarpa	Ptp.1041.1.S1_at	CK090202	hypothetical protein	-	3e-45	At1g64680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+1	32	Triticum aestivum	TaAffx.53528.1.S1_at	CA691477	-	-	3e+0	At3g03170	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.13345.6.A1_x_at	CA402028	hypothetical protein LOC100279020	-	2e-2	At2g30310	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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