Gene omics information

Query gene ID	1612660_at
Gene name	hypothetical protein LOC100244096
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	S.X.	H.G.	Please select
0.91	98.8	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select
0.61	83.2	1620494_at	CF414991	-	-	1e+0	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.57	79.8	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	S.X.	H.G.	Please select
0.53	75.2	1619282_at	CB971606	hypothetical protein LOC100252267	-	5e-75	At4g21710	NRPB2	S.X.	H.G.	Please select
0.31	41.3	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2809	1616465_at	CB980017	-	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	C.G.	S.X.	Please select
0.02	5e-2	38	1618817_at	CA807925	hypothetical protein LOC100252043	-	7e-3	At3g57090	BIGYIN	C.G.	S.X.	Please select
0.01	2e-1	36	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	C.G.	S.X.	Please select
0.02	2e-1	36	1606670_at	CF214062	hypothetical protein LOC100243133	-	2e-2	At1g29230	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)	C.G.	S.X.	Please select
0.02	8e-1	34	1614022_at	CF212029	hypothetical protein LOC100252502	-	6e-9	At4g36970	remorin family protein	C.G.	S.X.	Please select
0.02	8e-1	34	1610720_at	CF214229	hypothetical protein LOC100243517	-	2e-15	At5g53800	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620707_at	CB346387	-	-	4e+0	At3g23172	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	1618658_at	CF215632	hypothetical protein LOC100266093	-	3e-15	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	C.G.	S.X.	Please select
0.01	3e+0	32	1617140_at	CD720226	-	-	8e-33	At4g28710	XIH	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-39	165	Arabidopsis thaliana	At1g20960	838690	emb1507 (embryo defective 1507)	F:in 6 functions;P:embryonic development ending in seed dormancy;C:nucleolus, membrane;OBMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	6e-67	256	Glycine max	Gma.7556.1.S1_at	BG651551	-	-	2e-20	At1g20960	emb1507 (embryo defective 1507)	C.G.	S.X.	Please select
0.09	6e-12	71	Hordeum vulgare	Contig8091_at	Contig8091	-	-	1e-43	At1g20960	emb1507 (embryo defective 1507)	C.G.	S.X.	Please select
0.13	2e-24	115	Oryza sativa	Os.17297.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-97	357	Populus trichocarpa	PtpAffx.108967.1.S1_at	BU815959	hypothetical protein	-	8e-49	At2g42270	U5 small nuclear ribonucleoprotein helicase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	9e-19	95	Triticum aestivum	Ta.6828.2.A1_x_at	CK167595	-	-	7e-4	At1g20960	emb1507 (embryo defective 1507)	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	Zm.15779.1.A1_at	CD484306	-	-	7e-2	At3g14670	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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