Gene omics information

Query gene ID	1612654_at
Gene name	hypothetical protein LOC100256926
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1612654_at	CA809225	hypothetical protein LOC100256926	-	3e-19	At5g55290	ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.55	77.3	1608755_at	BQ797264	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	S.X.	H.G.	Please select
0.53	75.2	1620441_s_at	BQ797264	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	S.X.	H.G.	Please select
0.50	72.7	1609432_at	CB916730	similar to sec61beta family protein	-	8e-23	At3g60540	sec61beta family protein	S.X.	H.G.	Please select
0.50	72.7	1616757_at	CF213496	mitochondrial cytochrome c	-	2e-46	At4g10040	CYTC-2 (cytochrome c-2)	S.X.	H.G.	Please select
0.40	57.7	1615480_at	BQ799376	hypothetical protein LOC100247007	-	2e-6	At4g26210	mitochondrial ATP synthase g subunit family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2	98.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9	96.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-29	127	1611174_at	CD801315	hypothetical protein LOC100255548	-	3e-10	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1621096_at	CD003898	-	-	1e-3	At1g53460	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1621098_at	CB975046	hypothetical protein LOC100245221	-	8e-13	At1g16900	sugar binding / transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	5e+0	30	1619800_at	CF203389.1	-	-	1e-3	At5g59350	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1617804_at	CF204821.1	-	-	3e+0	At5g65340	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1614190_at	CF207712	-	-	4e-1	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.02	5e+0	30	1610836_at	CF208642	hypothetical protein LOC100257386	-	5e-10	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1609386_at	BQ798112	hypothetical protein LOC100248340	-	4e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1608481_at	CD003898	hypothetical protein LOC100266017	-	1e-3	At1g53460	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	3e-19	95	Arabidopsis thaliana	At5g55290	835622	ATP synthase subunit H family protein	F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-17	89	Glycine max	Gma.7079.1.S1_s_at	BU577711	-	-	2e-5	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.10	3e-5	48	Hordeum vulgare	Contig6470_at	Contig6470	-	-	1e-3	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.14	2e-9	63	Oryza sativa	Os04g0660600	AK120899.1	-	ATP synthase subunit H family protein	3e-10	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	1e-16	87	Populus trichocarpa	Ptp.6175.2.S1_at	CV246158	hypothetical protein	-	3e-17	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-2	40	Triticum aestivum	Ta.5109.1.S1_a_at	CA713571	Plasma membrane H+-ATPase subunit H	-	5e-3	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.2157.5.A1_x_at	CK348105	ribosomal protein S11	-	2e-35	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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