Gene omics information

Query gene ID	1612649_s_at
Gene name	hypothetical protein LOC100244122
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1612649_s_at	CA809370	hypothetical protein LOC100244122	-	1e-6	At3g04670	WRKY39	S.X.	H.G.	Please select
0.60	81.9	1621792_at	CF414727	hypothetical protein LOC100249673	-	1e-3	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	S.X.	H.G.	Please select
0.50	72.7	1617441_at	CF074656	hypothetical protein LOC100246691	-	1e-13	At3g51850	CPK13	S.X.	H.G.	Please select
0.50	72.7	1622676_s_at	CF212246	hypothetical protein LOC100247010	-	3e-16	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.33	45.7	1620375_at	CA814054	hypothetical protein LOC100252099	-	3e-13	At3g05840	ATSK12	S.X.	H.G.	Please select
0.21	24.0	1618470_at	CD012303	hypothetical protein LOC100253407	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	3e-155	545	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	C.G.	S.X.	Please select
0.18	6e-18	89	1612237_at	BQ795624	-	-	8e-11	At4g24240	WRKY7	C.G.	S.X.	Please select
0.10	2e-5	48	1619424_at	BQ800205	hypothetical protein LOC100267695	-	5e-9	At4g23550	WRKY29	C.G.	S.X.	Please select
0.03	7e-2	36	1618909_at	CF511922	hypothetical protein LOC100264914	-	1e+0	At1g30880	unknown protein	C.G.	S.X.	Please select
0.07	1e+0	32	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	C.G.	S.X.	Please select
0.00	1e+0	32	1620102_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.00	1e+0	32	1615099_s_at	CB970583	hypothetical protein LOC100242764 /// similar to cytochrome f	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.04	1e+0	32	1614291_at	CD007866	-	-	1e+0	At4g38401	unknown protein	C.G.	S.X.	Please select
0.00	1e+0	32	1612526_s_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-6	54	Arabidopsis thaliana	At3g04670	819625	WRKY39	member of WRKY Transcription Factor; Group II-d	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	7e-24	111	Glycine max	GmaAffx.90271.1.S1_s_at	CF805996	-	-	7e-15	At4g31550	WRKY11	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	OsAffx.21225.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	4e-7	56	Populus trichocarpa	PtpAffx.54256.2.A1_s_at	CV229094	hypothetical protein	-	8e-33	At4g24240	WRKY7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	TaAffx.38839.1.S1_at	BJ208672	-	-	3e+0	At3g17261	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.18373.1.A1_at	CO520243	WRKY transcription factor 21	-	6e-2	At5g28650	WRKY74	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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