CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612648_at

Gene name hypothetical protein LOC100260257

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1612648_at CD798203 hypothetical protein LOC100260257 - 3e-1 At1g42960 - S.X. H.G.
0.73 90.8 1608066_at CB342796 hypothetical protein LOC100254977 - 5e-1 At5g43570 serine-type endopeptidase inhibitor S.X. H.G.
0.67 87.9 1610344_at BQ796295 hypothetical protein LOC100246080 - 9e-22 At1g21000 zinc-binding family protein S.X. H.G.
0.50 72.7 1622142_at CB839449 hypothetical protein LOC100261425 - 1e+0 At3g02885 GASA5 (GAST1 PROTEIN HOMOLOG 5) S.X. H.G.
0.40 57.7 1617575_s_at CD800130 hypothetical protein LOC100246832 - 1e-1 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) S.X. H.G.
0.23 27.5 1610505_at CD801882 hypothetical protein LOC100260568 - 5e-16 At2g47710 universal stress protein (USP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.4 99.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
12.2 99.8 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
9.5 99.6 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
7.1 99.1 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
7.0 99.1 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.7 99.0 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.4 98.9 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.0 98.7 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.8 98.6 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
5.6 98.4 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-13 73 1621817_at CB978007 - - 1e+0 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) C.G. S.X.
0.05 4e-13 73 1611820_at CB914713 hypothetical protein LOC100265484 - 2e-2 At1g60420 DC1 domain-containing protein C.G. S.X.
0.02 4e-1 34 1617877_at CF517286 hypothetical protein LOC100266902 - 6e-10 At1g10200 WLIM1 C.G. S.X.
0.02 1e+0 32 1622526_at CB920201 - - 2e+0 At4g31020 unknown protein C.G. S.X.
0.03 1e+0 32 1621970_at CD713131 hypothetical protein LOC100243642 - 9e-2 At3g58210 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.02 1e+0 32 1621632_at BQ794172 hypothetical protein LOC100266611 - 9e-28 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.02 1e+0 32 1618698_at CB920201 hypothetical protein LOC100264858 - 2e+0 At4g31020 unknown protein C.G. S.X.
0.02 1e+0 32 1616700_at CB910092 hypothetical protein LOC100243135 - 6e-38 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
0.02 1e+0 32 1614427_at CB974176 - - 7e+0 At5g37055 SEF (SERRATED LEAVES AND EARLY FLOWERING) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At1g42960 840894 - expressed protein localized to the inner membrane of the chloroplast. - - - C.G. S.X.
0.11 7e-6 52 Glycine max GmaAffx.91687.1.S1_at CF807412 - - 3e-1 At3g17120 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare rbasd18a22_s_at rbasd18a22 - - 3e-3 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
0.02 1e-1 38 Oryza sativa Os11g0227600 AK101375.1 - Conserved hypothetical protein 1e+0 At1g17147 - C.G. S.X.
0.04 3e-2 40 Populus trichocarpa PtpAffx.15327.2.A1_at BP931895 hypothetical protein - 4e-1 At2g18020 EMB2296 (embryo defective 2296) C.G. S.X.
0.05 3e-4 46 Triticum aestivum Ta.26561.1.A1_at CD491024 - - 5e+0 At4g17720 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 1e-4 46 Zea mays Zm.411.1.A1_at U90944.1 nucleoredoxin1 - 3e-1 At1g60420 DC1 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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