Gene omics information

Query gene ID	1612646_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	83.2	1612646_at	CB349810	-	-	6e-2	At3g61940	MTPA1	S.X.	H.G.	Please select
0.36	50.7	1619500_at	CF404052	-	-	6e-2	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	S.X.	H.G.	Please select
0.36	50.7	1619659_s_at	CF405842	pectate lyase PL1-like	-	2e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	S.X.	H.G.	Please select
0.28	37.7	1610465_s_at	CB982876	hypothetical LOC100245940	-	2e-13	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	S.X.	H.G.	Please select
0.21	24.0	1619056_at	CB917774	hypothetical protein LOC100248590	-	2e-5	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select
0.20	22.4	1612901_s_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.14	14.4	1622770_at	CF209970	hypothetical protein LOC100259874	-	3e-22	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.4	99.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.2	99.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.1	99.4	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.4	99.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.9	98.6	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
5.0	98.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	9e-14	75	1615971_a_at	CB980630	hypothetical protein LOC100262468	-	3e-1	At2g46800	ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.05	2e-5	48	1609730_at	CB348062	hypothetical protein LOC100248652	-	7e-2	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	C.G.	S.X.	Please select
0.03	5e-3	40	1616413_at	AF003007.1	VVTL1	-	4e-5	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.03	7e-2	36	1616458_s_at	CF515510	hypothetical protein LOC100256310	-	1e-1	At3g43910	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	36	1609018_at	CF204139.1	-	-	1e+0	At3g44580	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1615630_at	CD798495	hypothetical protein LOC100250058	-	4e-1	At1g26930	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1610148_at	CF518897	hypothetical protein LOC100251826	-	9e-9	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	C.G.	S.X.	Please select
0.03	1e+0	32	1622861_at	CF214220	-	-	1e+0	At5g58782	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1622680_at	CB979746	-	-	6e-2	At1g70030	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	38	Arabidopsis thaliana	At3g61940	825367	MTPA1	member of Zinc transporter (ZAT) family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	Gma.3952.1.S1_at	BQ452478	-	-	6e-1	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	HV_CEb0015M10r2_at	HV_CEb0015M10r2	-	-	3e+0	At5g35695	unknown protein	C.G.	S.X.	Please select
0.06	1e-1	38	Oryza sativa	OsAffx.505.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-3	42	Populus trichocarpa	PtpAffx.221470.1.S1_at	pmrna38370	-	-	2e-7	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	32	Triticum aestivum	TaAffx.4244.1.A1_at	CA747346	-	-	1e-1	At2g03780	translin family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.720.1.S1_at	AI739909	-	-	2e-1	At1g11572	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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