Gene omics information

Query gene ID	1612597_at
Gene name	hypothetical protein LOC100245968
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	88.3	1612597_at	CD797662	hypothetical protein LOC100245968	-	3e-5	At4g22745	MBD1	S.X.	H.G.	Please select
0.52	73.9	1622402_at	CD799344	hypothetical protein LOC100241730	-	4e+0	At3g15260	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.50	72.7	1617461_at	CF609620	hypothetical protein LOC100245670	-	1e-1	At5g25360	unknown protein	S.X.	H.G.	Please select
0.42	60.1	1615682_s_at	CA809122	hypothetical protein LOC100247119	-	2e-15	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select
0.42	60.1	1620284_at	CA817004	hypothetical protein LOC100249470	-	1e-17	At4g35220	cyclase family protein	S.X.	H.G.	Please select
0.32	43.1	1619039_at	CF405804	hypothetical protein LOC100261285	-	2e-3	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	S.X.	H.G.	Please select
0.32	43.1	1617485_at	CF209626	-	-	2e-8	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.23	27.5	1607758_at	BQ796718	hypothetical protein LOC100267502	-	3e-20	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select
0.21	24.0	1617058_s_at	CA813874	hypothetical protein LOC100246864	-	4e+0	At5g04130	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	S.X.	H.G.	Please select
0.21	24.0	1615315_at	CB921193	hypothetical protein LOC100251685	-	5e-54	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	98.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1615290_at	CD798746	-	-	5e-12	At1g08450	CRT3 (CALRETICULIN 3)	C.G.	S.X.	Please select
0.02	5e-1	34	1612764_at	CD718151	-	-	1e-13	At4g27600	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1609839_at	CF202460.1	hypothetical protein LOC100259598	-	4e-1	At1g69760	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1608986_at	CD718151	-	-	1e-13	At4g27600	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1622113_at	CF209612	hypothetical protein LOC100245719	-	4e-61	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619661_at	CB001672	-	-	1e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select
0.02	2e+0	32	1619573_at	CD721204	hypothetical protein LOC100250659	-	2e-3	At1g27730	STZ (salt tolerance zinc finger)	C.G.	S.X.	Please select
0.03	2e+0	32	1616549_at	CF511455	-	-	4e+0	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	1615902_at	CB001672	-	-	1e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-5	50	Arabidopsis thaliana	At4g22745	828371	MBD1	Protein containing methyl-CpG-binding domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	6e-10	65	Glycine max	GmaAffx.18798.1.S1_at	BE819840	-	-	1e-7	At3g63030	MBD4	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig403_at	Contig403	-	-	5e-22	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	C.G.	S.X.	Please select
0.03	5e-2	40	Oryza sativa	Os02g0290300	AK068360.1	-	Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein	4e-10	At1g04140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-10	65	Populus trichocarpa	PtpAffx.37445.1.A1_at	CV252110	methyl binding domain protein	-	5e-1	At3g63030	MBD4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.15672.1.S1_at	CA486250	-	-	3e+0	At1g18835	MIF3 (MINI ZINC FINGER)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.9155.1.A1_at	BM266962	-	-	1e+0	At5g03520	ATRAB8C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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