Gene omics information

Query gene ID	1612583_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1612583_at	CB003299	-	-	9e-5	Atcg00730	-	S.X.	H.G.	Please select
0.23	27.5	1606852_at	CF415037	-	-	3e-5	At3g03480	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	S.X.	H.G.	Please select
0.02	3.2	1610581_at	BQ798257	hypothetical protein LOC100249288	-	2e-14	At2g24395	chaperone protein dnaJ-related	S.X.	H.G.	Please select
0.01	2.1	1612237_at	BQ795624	-	-	8e-11	At4g24240	WRKY7	S.X.	H.G.	Please select
0.01	2.1	1618444_at	CD797855	hypothetical protein LOC100251001	-	1e+0	At1g50800	unknown protein	S.X.	H.G.	Please select
0.00	0.5	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.7	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
8.5	99.4	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.6	99.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.2	99.1	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.7	99.0	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.9	98.6	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
4.4	97.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-92	337	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	C.G.	S.X.	Please select
0.10	7e-83	305	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.10	7e-83	305	1614503_at	CB972598	-	-	0	Atcg00740	-	C.G.	S.X.	Please select
0.02	4e-1	34	1620026_at	CB972617	-	-	2e+0	At3g24670	pectate lyase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1618619_at	CB970249	hypothetical LOC100246843	-	5e-78	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.03	4e-1	34	1613574_at	CF203823.1	-	-	3e+0	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	C.G.	S.X.	Please select
0.02	4e-1	34	1612089_at	CF212718	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	C.G.	S.X.	Please select
0.03	4e-1	34	1607123_at	CF204106.1	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.02	4e-1	34	1606892_at	CF516630	-	-	6e+0	At5g55690	MADS-box protein (AGL47)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-5	48	Arabidopsis thaliana	Atcg00730	-	-	A chloroplast gene encoding subunit IV of the cytochrome b6/f complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-7	57	Glycine max	GmaAffx.14048.2.S1_at	BI944527	-	-	1e-149	Atcg00730	-	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	HVSMEn0010C14f_at	HVSMEn0010C14f	-	-	3e+0	At3g07640	unknown protein	C.G.	S.X.	Please select
0.09	3e-3	44	Oryza sativa	Os.51504.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-4	46	Populus trichocarpa	PtpAffx.219294.1.S1_at	pmrna35169	hypothetical protein	-	1e-154	Atcg00730	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-2	38	Triticum aestivum	TaAffx.107470.1.S1_at	CA699346	-	-	1e-18	Atcg00730	-	C.G.	S.X.	Please select
0.04	2e-4	46	Zea mays	ZmAffx.1509.1.S1_at	11990232-51	-	-	2e-106	Atcg00730	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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