Gene omics information

Query gene ID	1612468_at
Gene name	hypothetical protein LOC100255261
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1612468_at	CA815164	hypothetical protein LOC100255261	-	2e-8	At1g70210	CYCD1	S.X.	H.G.	Please select
0.50	72.7	1609148_at	CF213127	hypothetical protein LOC100245363	-	9e-15	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	S.X.	H.G.	Please select
0.46	66.5	1608794_a_at	CF517708	hypothetical protein LOC100255261	-	1e+0	At2g19480	NAP1	S.X.	H.G.	Please select
0.33	45.7	1612180_at	CF608682	hypothetical protein LOC100243320	-	5e-18	At5g60450	ARF4 (AUXIN RESPONSE FACTOR 4)	S.X.	H.G.	Please select
0.32	43.1	1606591_at	CB004415	hypothetical protein LOC100263197	-	4e+0	At5g19172	-	S.X.	H.G.	Please select
0.29	37.7	1607426_at	AF159124.1	beta-galactosidase	-	9e-26	At4g36360	BGAL3 (beta-galactosidase 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
3.8	96.4	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.8	96.4	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
3.7	96.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.9	93.8	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
2.9	93.8	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.8	93.4	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	30	1621472_at	CF209680	hypothetical protein LOC100264483	-	4e-2	At4g16790	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620760_s_at	CB339602	hypothetical protein LOC100254474	-	6e-16	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620001_at	CF207174	hypothetical protein LOC100244517	-	2e+0	At4g29283	LCR21 (Low-molecular-weight cysteine-rich 21)	C.G.	S.X.	Please select
0.03	5e+0	30	1619306_at	CF214121	-	-	1e+0	At4g35190	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1619237_at	CD009545	-	-	2e-13	At5g02040	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	C.G.	S.X.	Please select
0.02	5e+0	30	1618725_at	CD797755	hypothetical protein LOC100265933	-	7e-4	At5g54540	-	C.G.	S.X.	Please select
0.03	5e+0	30	1618790_at	CD799281	-	-	4e+0	At5g16110	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1617820_at	CB980056	hypothetical protein LOC100257155	-	8e-2	At4g20470	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1616601_at	CF210956	hypothetical protein LOC100256416	-	9e-9	At3g26420	ATRZ-1A	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-8	59	Arabidopsis thaliana	At1g70210	843357	CYCD1	Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	GmaAffx.69489.1.S1_at	BG238202	-	-	2e-7	At1g70210	CYCD1	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig11870_at	Contig11870	-	-	7e-1	At1g70210	CYCD1	C.G.	S.X.	Please select
0.10	6e-4	46	Oryza sativa	Os09g0382300	9637.m01847	-	Cyclin, C-terminal domain containing protein	1e-1	At1g70210	CYCD1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	9e-67	254	Populus trichocarpa	PtpAffx.132254.1.S1_at	CN520214	hypothetical protein	-	3e-12	At1g70210	CYCD1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	TaAffx.23596.1.S1_at	CA732895	-	-	7e-2	At1g70210	CYCD1	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.13852.1.A1_at	AF351192.1	-	-	2e+1	At5g15970	KIN2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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