CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1612436_s_at

Gene name isoflavone reductase-like protein 3

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1612436_s_at CF209460 isoflavone reductase-like protein 3 - 1e+0 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.23 27.5 1616064_at CF205270.1 - - 1e-4 At3g47540 chitinase, putative S.X. H.G.
0.11 11.3 1613586_at CF513392 hypothetical protein LOC100245607 - 2e-3 At4g20830 FAD-binding domain-containing protein S.X. H.G.
0.03 4.2 1608931_at CD799025 similar to AO (L-ASPARTATE OXIDASE); L-aspartate oxidase - 1e+1 At5g41390 - S.X. H.G.
0.01 2.1 1617421_at CF205705.1 - - 1e+0 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.00 0.5 1621026_at CF519288 hypothetical protein LOC100242241 - 1e-22 At3g28480 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.4 100.0 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
19.2 99.9 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
18.3 99.9 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
15.9 99.9 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.5 99.6 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.4 99.4 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.1 99.4 GSM147713 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 42
7.4 99.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
6.6 98.9 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
5.6 98.4 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 817 1617421_at CF205705.1 - - 1e+0 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.22 4e-31 133 1613326_at CF204234.1 - - 2e+0 At3g56420 - C.G. S.X.
0.03 3e-1 34 1615101_at CD715458 - - 5e+0 At5g12236 unknown protein C.G. S.X.
0.03 3e-1 34 1611333_at CD715458 - - 5e+0 At5g12236 unknown protein C.G. S.X.
0.02 1e+0 32 1612610_s_at CB971141 hypothetical protein LOC100243591 - 2e-31 At2g37270 ATRPS5B (RIBOSOMAL PROTEIN 5B) C.G. S.X.
0.02 1e+0 32 1608834_at CB348757 hypothetical protein LOC100241257 - 2e-16 At5g14030 translocon-associated protein beta (TRAPB) family protein C.G. S.X.
0.01 5e+0 30 1622461_at CF207190 hypothetical protein LOC100265048 - 3e-28 At5g53570 RabGAP/TBC domain-containing protein C.G. S.X.
0.02 5e+0 30 1621448_at BQ796150 hypothetical protein LOC100251801 - 7e-3 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) C.G. S.X.
0.03 5e+0 30 1621212_at BQ794170 hypothetical protein LOC100260205 - 7e-5 At4g12790 ATP-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). - - - C.G. S.X.
0.04 6e+0 32 Glycine max Gma.5463.1.S1_at BM092769 - - 6e-1 At2g44581 protein binding / zinc ion binding C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig23304_at Contig23304 - - 6e+0 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.03 5e-1 36 Oryza sativa OsAffx.31184.1.S1_at - - - 0 C.G. S.X.
0.12 1e-7 57 Populus trichocarpa PtpAffx.206981.1.S1_at pmrna13831 phenylcoumaran benzylic ether reductase -like protein - 5e-1 At1g33930 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.84953.1.S1_at CA626890 - - 3e+0 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) C.G. S.X.
0.02 4e-1 34 Zea mays Zm.12937.1.S1_at CA402098 psRT17-1 like protein - 4e-17 At4g24530 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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