Gene omics information

Query gene ID	1612357_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1612357_s_at	CF203581.1	-	-	4e+0	At5g66240	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.73	90.8	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	S.X.	H.G.	Please select
0.67	87.9	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.60	81.9	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.50	72.7	1614462_at	CB343121	-	-	4e-63	Atcg00300	-	S.X.	H.G.	Please select
0.36	50.7	1617605_at	CF513977	-	-	0	Atcg00680	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
5.8	98.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
5.7	98.5	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
5.5	98.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
5.5	98.4	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
5.4	98.3	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
5.3	98.2	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
5.3	98.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
5.3	98.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
5.3	98.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	720	1618274_at	CB972471	-	-	3e-70	Atcg00710	-	C.G.	S.X.	Please select
0.75	2e-141	500	1612842_at	CB339508	-	-	4e+0	At5g14690	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1621980_at	CB003356	-	-	3e-2	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1618189_at	CB003356	-	-	3e-2	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1622521_at	BQ795423	-	-	5e-15	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select
0.01	1e+0	32	1619468_at	AY043232.1	pectin methylesterase PME1	-	7e-8	At4g33220	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.03	1e+0	32	1609328_at	BQ792391	hypothetical protein LOC100252113	-	2e-8	At5g04060	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.01	4e+0	30	1622468_at	CF512400	-	-	4e-51	Atcg01120	-	C.G.	S.X.	Please select
0.03	4e+0	30	1622601_at	CB977758	-	-	5e+0	At2g35736	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At5g66240	836756	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	Gma.8950.1.A1_at	BU764578	-	-	1e+0	At2g18260	SYP112 (SYNTAXIN OF PLANTS 112)	C.G.	S.X.	Please select
0.03	7e+0	30	Hordeum vulgare	Contig11024_at	Contig11024	-	-	3e-10	At1g32550	ferredoxin family protein	C.G.	S.X.	Please select
0.12	8e-9	61	Oryza sativa	Os.26522.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	3e-23	109	Populus trichocarpa	Ptp.2632.1.S1_at	CK111660	-	-	6e-72	Atcg00710	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-5	50	Triticum aestivum	TaAffx.107567.3.S1_at	CA675299	-	-	1e+1	At5g36190	-	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	ZmAffx.92.1.A1_at	AI665387	-	-	2e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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