Gene omics information

Query gene ID	1612288_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1612288_at	CB969093	-	-	3e-1	At4g09040	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.91	98.8	1606845_at	CF212991	hypothetical protein LOC100257315	-	1e+0	At3g52510	-	S.X.	H.G.	Please select
0.91	98.8	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	S.X.	H.G.	Please select
0.71	89.5	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.67	87.9	1617334_s_at	CF607954	-	-	1e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.63	84.3	1606429_at	CF373019	hypothetical protein LOC100251832	-	2e-1	At4g12390	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	100.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
25.7	100.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
22.4	100.0	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.8	99.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.3	99.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.8	99.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.7	99.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.6	99.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.4	99.4	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7	99.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	7e-110	395	1622720_s_at	BQ794584	YS1-like protein-like	-	8e-10	At4g24120	YSL1 (YELLOW STRIPE LIKE 1)	C.G.	S.X.	Please select
0.09	1e-3	42	1617609_at	CF207468	hypothetical protein LOC100255514	-	3e-24	At5g24380	YSL2 (YELLOW STRIPE LIKE 2)	C.G.	S.X.	Please select
0.03	2e-2	38	1617990_s_at	CB969113	hypothetical protein LOC100249683	-	1e-16	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	C.G.	S.X.	Please select
0.04	2e-2	38	1609829_at	CF203851.1	-	-	2e-5	At5g45450	iron transporter-related	C.G.	S.X.	Please select
0.03	2e-2	38	1606983_at	CB969113	hypothetical protein LOC100249683	-	1e-16	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	C.G.	S.X.	Please select
0.03	1e+0	32	1617888_at	CB968792	hypothetical protein LOC100246654 /// hypothetical protein LOC100254321 /// hypothetical protein LOC100258794	-	4e-1	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1615419_s_at	CB975116	hypothetical protein LOC100244646	-	1e-10	At2g33220	-	C.G.	S.X.	Please select
0.01	5e+0	30	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	C.G.	S.X.	Please select
0.02	5e+0	30	1620492_at	CA818735	similar to YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter	-	3e-23	At3g27020	YSL6 (YELLOW STRIPE LIKE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g09040	826483	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-7	57	Glycine max	Gma.15578.1.S1_at	CD414652	-	-	2e-15	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	C.G.	S.X.	Please select
0.04	8e-3	40	Hordeum vulgare	Contig19081_at	Contig19081	-	-	2e-3	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	C.G.	S.X.	Please select
0.02	8e+0	32	Oryza sativa	OsAffx.2589.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-19	97	Populus trichocarpa	PtpAffx.16423.1.S1_at	CV262996	oligopeptide transporter OPT family	-	3e-10	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.55509.1.S1_at	CA665154	-	-	7e-5	At4g24120	YSL1 (YELLOW STRIPE LIKE 1)	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	ZmAffx.554.1.A1_at	AI714384	-	-	6e-1	At3g15280	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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