Gene omics information

Query gene ID	1612267_at
Gene name	similar to NADP-specific isocitrate dehydrogenase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.83	94.6	1611198_s_at	CF413741	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	S.X.	H.G.	Please select
0.83	94.6	1621259_at	BQ792070	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	S.X.	H.G.	Please select
0.77	92.3	1613313_at	BQ798873	hypothetical protein LOC100245611	-	1e-16	At3g11830	chaperonin, putative	S.X.	H.G.	Please select
0.55	77.3	1618344_at	BQ796097	hypothetical protein LOC100266422	-	2e-5	At1g51160	synbindin, putative	S.X.	H.G.	Please select
0.40	57.7	1608031_at	BQ792714	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	99.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.2	98.8	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.8	98.6	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	5e-153	539	1610950_at	CA809237	-	-	4e+0	At5g50820	anac097 (Arabidopsis NAC domain containing protein 97)	C.G.	S.X.	Please select
0.07	1e-20	99	1620526_at	BQ799509	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.03	8e-7	54	1615736_at	CD711591	-	-	7e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please select
0.03	8e-7	54	1611925_at	CD711591	-	-	7e+0	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please select
0.02	1e-5	50	1608263_a_at	BQ794795	alcohol dehydrogenase 7	-	8e-35	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.02	5e-5	48	1622219_at	CF403872	hypothetical protein LOC100243554	-	9e-10	At4g00755	F-box family protein	C.G.	S.X.	Please select
0.02	5e-5	48	1618354_at	CD711383	hypothetical protein LOC100257006	-	1e+0	At3g52820	PAP22 (PURPLE ACID PHOSPHATASE 22)	C.G.	S.X.	Please select
0.02	5e-5	48	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.02	5e-5	48	1614844_at	CB005866	-	-	1e-3	At1g11790	ADT1 (arogenate dehydratase 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	9e-65	248	Arabidopsis thaliana	At5g14590	831311	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	F:isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:isocitrate metabolic process, metabolic process;C:mitochondrion, chloroplast;OBMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	4e-83	309	Glycine max	GmaAffx.82082.1.S1_at	BM732761	-	-	2e-67	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.20	2e-17	89	Hordeum vulgare	Contig11405_at	Contig11405	-	-	2e-9	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.48	2e-101	371	Oryza sativa	Os04g0508200	AK070042.1	-	Isocitrate/isopropylmalate dehydrogenase familyprotein	4e-12	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	1e-49	198	Populus trichocarpa	PtpAffx.31663.1.A1_at	CV226347	hypothetical protein	-	5e-16	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	9e-28	125	Triticum aestivum	Ta.1053.1.S1_x_at	BJ251547	-	-	6e-79	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.42	1e-71	270	Zea mays	Zm.4083.1.A1_at	CA403575	hypothetical protein LOC100191657	-	6e-45	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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