Gene omics information

Query gene ID	1612231_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1612231_at	BM436906	-	-	7e-3	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	S.X.	H.G.	Please select
0.46	66.5	1606814_at	CF372213	hypothetical protein LOC100246736	-	1e-12	At5g60020	LAC17 (laccase 17)	S.X.	H.G.	Please select
0.18	19.4	1606524_at	CB979170	hypothetical protein LOC100266440	-	2e-19	At3g01810	-	S.X.	H.G.	Please select
0.13	13.3	1610669_at	CF208675	hypothetical protein LOC100259403	-	6e-2	At1g69825	-	S.X.	H.G.	Please select
0.10	10.3	1606472_at	CB979487	-	-	8e-21	At3g29390	RIK (RS2-Interacting KH protein)	S.X.	H.G.	Please select
0.04	5.2	1621671_at	CF211661	hypothetical protein LOC100267366	-	2e-9	At3g53400	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1806	1616060_at	BM436906	hypothetical protein LOC100247072	-	7e-3	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.02	5e-1	34	1617385_at	CF513590	hypothetical protein LOC100251722	-	2e-87	At2g27020	PAG1	C.G.	S.X.	Please select
0.02	2e+0	32	1620929_at	CD005828	-	-	5e+0	At4g10820	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1620641_at	CF511421	hypothetical protein LOC100265355	-	3e-14	At5g62430	CDF1 (CYCLING DOF FACTOR 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1617172_at	CD005828	-	-	5e+0	At4g10820	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614084_at	CD718792	-	-	3e-1	At2g18810	DNA binding	C.G.	S.X.	Please select
0.02	2e+0	32	1610894_at	CD798389	-	-	8e-14	At5g04080	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1610291_at	CD718792	-	-	3e-1	At2g18810	DNA binding	C.G.	S.X.	Please select
0.02	2e+0	32	1609918_at	CF414641	hypothetical protein LOC100259885	-	1e-1	At3g55460	SCL30	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-3	42	Arabidopsis thaliana	At3g18870	821420	mitochondrial transcription termination factor-related / mTERF-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	GmaAffx.10437.1.A1_at	BU550591	-	-	1e+0	At5g35475	-	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	Contig3214_at	Contig3214	-	-	2e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os10g0345900	AK120983.1	-	Hypothetical protein	2e+1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-2	40	Populus trichocarpa	PtpAffx.204197.1.S1_at	pmrna8261	hypothetical protein	-	1e-1	At2g34620	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.5368.1.S1_at	BJ281777	-	-	2e+0	At5g01610	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9850.1.A1_at	BM332622	-	-	2e+0	At1g20880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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