Gene omics information

Query gene ID	1612218_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1612218_at	CF205110.1	-	-	5e+0	Atcg00750	-	S.X.	H.G.	Please select
0.71	89.5	1619482_at	CK138138.1	-	-	5e-3	At2g27385	unknown protein	S.X.	H.G.	Please select
0.63	84.3	1610305_at	CK138223.1	-	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	S.X.	H.G.	Please select
0.62	83.3	1619011_at	CF208055	hypothetical protein LOC100247295	-	7e-8	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	S.X.	H.G.	Please select
0.56	79.4	1614207_at	CB976747	hypothetical protein LOC100241610	-	2e-38	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	S.X.	H.G.	Please select
0.54	75.7	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.54	75.7	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select
0.50	72.7	1621373_s_at	CK138238.1	hypothetical protein LOC100249881	-	1e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.50	72.7	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1614517_x_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.8	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
9.0	99.5	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
8.5	99.4	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.7	99.3	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.9	99.1	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.8	98.6	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	4e-152	535	1620564_at	CA812876	-	-	1e-21	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.03	9e-2	36	1620836_at	BQ794337	hypothetical protein LOC100260803	-	1e-6	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	C.G.	S.X.	Please select
0.04	3e-1	34	1619060_at	CA817769	-	-	1e+0	At3g57340	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.02	1e+0	32	1614670_at	BQ796652	hypothetical protein LOC100245367	-	7e-7	At3g47360	AtHSD3 (hydroxysteroid dehydrogenase 3)	C.G.	S.X.	Please select
0.03	1e+0	32	1610538_at	BQ796215	hypothetical protein LOC100260291	-	3e-1	At1g60740	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1609801_at	CF404736	hypothetical protein LOC100258598	-	6e-47	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	C.G.	S.X.	Please select
0.02	1e+0	32	1607939_at	CF203406.1	hypothetical protein LOC100243978	-	7e-12	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1622666_at	CF608102	hypothetical protein LOC100248927	-	5e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	Atcg00750	-	-	30S chloroplast ribosomal protein S11	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	Gma.11430.1.S1_at	BE659510	-	-	9e-1	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig12264_s_at	Contig12264	-	-	2e-8	At3g59890	dihydrodipicolinate reductase family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.5355.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	32	Populus trichocarpa	PtpAffx.26457.1.A1_at	CK096685	-	-	2e-1	At4g03410	peroxisomal membrane protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.91829.1.S1_at	BJ301177	-	-	1e-1	At3g11773	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.376.1.A1_at	AI673923	-	-	8e-1	At5g18710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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